Object model changes to support 64bit.

Modify mirror objects so that references between them use an ObjectReference
value type rather than an Object* so that functionality to compress larger
references can be captured in the ObjectRefererence implementation.
ObjectReferences are 32bit and all other aspects of object layout remain as
they are currently.

Expand fields in objects holding pointers so they can hold 64bit pointers. Its
expected the size of these will come down by improving where we hold compiler
meta-data.
Stub out x86_64 architecture specific runtime implementation.
Modify OutputStream so that reads and writes are of unsigned quantities.
Make the use of portable or quick code more explicit.
Templatize AtomicInteger to support more than just int32_t as a type.
Add missing, and fix issues relating to, missing annotalysis information on the
mutator lock.
Refactor and share implementations for array copy between System and uses
elsewhere in the runtime.
Fix numerous 64bit build issues.

Change-Id: I1a5694c251a42c9eff71084dfdd4b51fff716822
diff --git a/runtime/offsets.h b/runtime/offsets.h
index 94ae805..e2dba9d 100644
--- a/runtime/offsets.h
+++ b/runtime/offsets.h
@@ -22,7 +22,7 @@
 
 namespace art {
 
-// Allow the meaning of offsets to be strongly typed
+// Allow the meaning of offsets to be strongly typed.
 class Offset {
  public:
   explicit Offset(size_t val) : val_(val) {}
@@ -37,7 +37,7 @@
 };
 std::ostream& operator<<(std::ostream& os, const Offset& offs);
 
-// Offsets relative to the current frame
+// Offsets relative to the current frame.
 class FrameOffset : public Offset {
  public:
   explicit FrameOffset(size_t val) : Offset(val) {}
@@ -45,13 +45,13 @@
   bool operator<(FrameOffset other) const { return val_ < other.val_; }
 };
 
-// Offsets relative to the current running thread
+// Offsets relative to the current running thread.
 class ThreadOffset : public Offset {
  public:
   explicit ThreadOffset(size_t val) : Offset(val) {}
 };
 
-// Offsets relative to an object
+// Offsets relative to an object.
 class MemberOffset : public Offset {
  public:
   explicit MemberOffset(size_t val) : Offset(val) {}