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+<h1><a href="genomics_v1.html">Genomics API</a> . <a href="genomics_v1.references.html">references</a></h1>
+<h2>Instance Methods</h2>
+<p class="toc_element">
+ <code><a href="genomics_v1.references.bases.html">bases()</a></code>
+</p>
+<p class="firstline">Returns the bases Resource.</p>
+
+<p class="toc_element">
+ <code><a href="#get">get(referenceId, x__xgafv=None)</a></code></p>
+<p class="firstline">Gets a reference. Implements [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).</p>
+<p class="toc_element">
+ <code><a href="#search">search(body, x__xgafv=None)</a></code></p>
+<p class="firstline">Searches for references which match the given criteria. Implements [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).</p>
+<h3>Method Details</h3>
+<div class="method">
+ <code class="details" id="get">get(referenceId, x__xgafv=None)</code>
+ <pre>Gets a reference. Implements [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
+
+Args:
+ referenceId: string, The ID of the reference. (required)
+ x__xgafv: string, V1 error format.
+
+Returns:
+ An object of the form:
+
+ { # A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.
+ "name": "A String", # The name of this reference, for example `22`.
+ "sourceUri": "A String", # The URI from which the sequence was obtained. Specifies a FASTA format file/string with one name, sequence pair.
+ "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`.
+ "A String",
+ ],
+ "length": "A String", # The length of this reference's sequence.
+ "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (e.g. 9606->human) if not specified by the containing reference set.
+ "id": "A String", # The server-generated reference ID, unique across all references.
+ "md5checksum": "A String", # MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.
+ }</pre>
+</div>
+
+<div class="method">
+ <code class="details" id="search">search(body, x__xgafv=None)</code>
+ <pre>Searches for references which match the given criteria. Implements [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
+
+Args:
+ body: object, The request body. (required)
+ The object takes the form of:
+
+{
+ "md5checksums": [ # If present, return references for which the `md5checksum` matches. See `Reference.md5checksum` for construction details.
+ "A String",
+ ],
+ "pageToken": "A String", # The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.
+ "referenceSetId": "A String", # If present, return only references which belong to this reference set.
+ "accessions": [ # If present, return references for which the accession matches this string. Best to give a version number, for example `GCF_000001405.26`. If only the main accession number is given then all records with that main accession will be returned, whichever version. Note that different versions will have different sequences.
+ "A String",
+ ],
+ "pageSize": 42, # Specifies the maximum number of results to return in a single page.
+ }
+
+ x__xgafv: string, V1 error format.
+
+Returns:
+ An object of the form:
+
+ {
+ "nextPageToken": "A String", # The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.
+ "references": [ # The matching references.
+ { # A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets.
+ "name": "A String", # The name of this reference, for example `22`.
+ "sourceUri": "A String", # The URI from which the sequence was obtained. Specifies a FASTA format file/string with one name, sequence pair.
+ "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`.
+ "A String",
+ ],
+ "length": "A String", # The length of this reference's sequence.
+ "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (e.g. 9606->human) if not specified by the containing reference set.
+ "id": "A String", # The server-generated reference ID, unique across all references.
+ "md5checksum": "A String", # MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.
+ },
+ ],
+ }</pre>
+</div>
+
+</body></html>
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