Update docs
diff --git a/docs/dyn/genomics_v1.variantsets.html b/docs/dyn/genomics_v1.variantsets.html
index 4ce7124..b2f54c1 100644
--- a/docs/dyn/genomics_v1.variantsets.html
+++ b/docs/dyn/genomics_v1.variantsets.html
@@ -79,7 +79,7 @@
<p class="firstline">Creates a new variant set. For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) The provided variant set must have a valid `datasetId` set - all other fields are optional. Note that the `id` field will be ignored, as this is assigned by the server.</p>
<p class="toc_element">
<code><a href="#delete">delete(variantSetId, x__xgafv=None)</a></code></p>
-<p class="firstline">Deletes the contents of a variant set. The variant set object is not deleted. For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)</p>
+<p class="firstline">Deletes a variant set including all variants, call sets, and calls within. This is not reversible. For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)</p>
<p class="toc_element">
<code><a href="#export">export(variantSetId, body, x__xgafv=None)</a></code></p>
<p class="firstline">Exports variant set data to an external destination. For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)</p>
@@ -102,6 +102,17 @@
The object takes the form of:
{ # A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ "name": "A String", # User-specified, mutable name.
+ "description": "A String", # A textual description of this variant set.
+ "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
+ { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
+ "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
+ },
+ ],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
+ "id": "A String", # The server-generated variant set ID, unique across all variant sets.
+ "datasetId": "A String", # The dataset to which this variant set belongs.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
"info": { # Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).
@@ -117,15 +128,6 @@
"id": "A String", # User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.
},
],
- "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
- "id": "A String", # The server-generated variant set ID, unique across all variant sets.
- "datasetId": "A String", # The dataset to which this variant set belongs.
- "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
- { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
- "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The name of the reference associated with this reference bound.
- },
- ],
}
x__xgafv: string, V1 error format.
@@ -134,6 +136,17 @@
An object of the form:
{ # A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ "name": "A String", # User-specified, mutable name.
+ "description": "A String", # A textual description of this variant set.
+ "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
+ { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
+ "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
+ },
+ ],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
+ "id": "A String", # The server-generated variant set ID, unique across all variant sets.
+ "datasetId": "A String", # The dataset to which this variant set belongs.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
"info": { # Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).
@@ -149,21 +162,12 @@
"id": "A String", # User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.
},
],
- "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
- "id": "A String", # The server-generated variant set ID, unique across all variant sets.
- "datasetId": "A String", # The dataset to which this variant set belongs.
- "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
- { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
- "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The name of the reference associated with this reference bound.
- },
- ],
}</pre>
</div>
<div class="method">
<code class="details" id="delete">delete(variantSetId, x__xgafv=None)</code>
- <pre>Deletes the contents of a variant set. The variant set object is not deleted. For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ <pre>Deletes a variant set including all variants, call sets, and calls within. This is not reversible. For the definitions of variant sets and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
Args:
variantSetId: string, The ID of the variant set to be deleted. (required)
@@ -233,6 +237,17 @@
An object of the form:
{ # A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ "name": "A String", # User-specified, mutable name.
+ "description": "A String", # A textual description of this variant set.
+ "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
+ { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
+ "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
+ },
+ ],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
+ "id": "A String", # The server-generated variant set ID, unique across all variant sets.
+ "datasetId": "A String", # The dataset to which this variant set belongs.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
"info": { # Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).
@@ -248,15 +263,6 @@
"id": "A String", # User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.
},
],
- "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
- "id": "A String", # The server-generated variant set ID, unique across all variant sets.
- "datasetId": "A String", # The dataset to which this variant set belongs.
- "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
- { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
- "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The name of the reference associated with this reference bound.
- },
- ],
}</pre>
</div>
@@ -270,6 +276,17 @@
The object takes the form of:
{ # A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ "name": "A String", # User-specified, mutable name.
+ "description": "A String", # A textual description of this variant set.
+ "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
+ { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
+ "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
+ },
+ ],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
+ "id": "A String", # The server-generated variant set ID, unique across all variant sets.
+ "datasetId": "A String", # The dataset to which this variant set belongs.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
"info": { # Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).
@@ -285,24 +302,26 @@
"id": "A String", # User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.
},
],
- "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
- "id": "A String", # The server-generated variant set ID, unique across all variant sets.
- "datasetId": "A String", # The dataset to which this variant set belongs.
- "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
- { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
- "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The name of the reference associated with this reference bound.
- },
- ],
}
- updateMask: string, An optional mask specifying which fields to update. Supported fields: * metadata. Leaving `updateMask` unset is equivalent to specifying all mutable fields.
+ updateMask: string, An optional mask specifying which fields to update. Supported fields: * metadata. * name. * description. Leaving `updateMask` unset is equivalent to specifying all mutable fields.
x__xgafv: string, V1 error format.
Returns:
An object of the form:
{ # A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ "name": "A String", # User-specified, mutable name.
+ "description": "A String", # A textual description of this variant set.
+ "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
+ { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
+ "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
+ },
+ ],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
+ "id": "A String", # The server-generated variant set ID, unique across all variant sets.
+ "datasetId": "A String", # The dataset to which this variant set belongs.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
"info": { # Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).
@@ -318,15 +337,6 @@
"id": "A String", # User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.
},
],
- "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
- "id": "A String", # The server-generated variant set ID, unique across all variant sets.
- "datasetId": "A String", # The dataset to which this variant set belongs.
- "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
- { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
- "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The name of the reference associated with this reference bound.
- },
- ],
}</pre>
</div>
@@ -355,6 +365,17 @@
"nextPageToken": "A String", # The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.
"variantSets": [ # The variant sets belonging to the requested dataset.
{ # A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ "name": "A String", # User-specified, mutable name.
+ "description": "A String", # A textual description of this variant set.
+ "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
+ { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
+ "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
+ },
+ ],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
+ "id": "A String", # The server-generated variant set ID, unique across all variant sets.
+ "datasetId": "A String", # The dataset to which this variant set belongs.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
"info": { # Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).
@@ -370,15 +391,6 @@
"id": "A String", # User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.
},
],
- "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
- "id": "A String", # The server-generated variant set ID, unique across all variant sets.
- "datasetId": "A String", # The dataset to which this variant set belongs.
- "referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
- { # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
- "upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The name of the reference associated with this reference bound.
- },
- ],
},
],
}</pre>