Updated docs
diff --git a/docs/dyn/genomics_v1beta2.variantsets.html b/docs/dyn/genomics_v1beta2.variantsets.html
index 7dc73e3..57ebb6e 100644
--- a/docs/dyn/genomics_v1beta2.variantsets.html
+++ b/docs/dyn/genomics_v1beta2.variantsets.html
@@ -116,9 +116,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -146,9 +149,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -220,9 +226,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -247,7 +256,7 @@
<code class="details" id="importVariants">importVariants(variantSetId, body)</code>
<pre>Creates variant data by asynchronously importing the provided information.
-The variants for import will be merged with any existing data and each other according to the behavior of mergeVariants. In particular, this means for merged VCF variants that have conflicting INFO fields, some data will be arbitrarily discarded. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set.
+The variants for import will be merged with any existing data and each other according to the behavior of mergeVariants. In particular, this means for merged VCF variants that have conflicting info fields, some data will be arbitrarily discarded. As a special case, for single-sample VCF files, QUAL and FILTER fields will be moved to the call level; these are sometimes interpreted in a call-specific context. Imported VCF headers are appended to the metadata already in a variant set.
Args:
variantSetId: string, Required. The variant set to which variant data should be imported. (required)
@@ -259,7 +268,7 @@
"sourceUris": [ # A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported.
"A String",
],
- "format": "A String", # The format of the variant data being imported. If unspecified, defaults to to "VCF".
+ "format": "A String", # The format of the variant data being imported. If unspecified, defaults to "VCF".
}
@@ -345,9 +354,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -375,9 +387,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -413,7 +428,7 @@
"datasetIds": [ # Exactly one dataset ID must be provided here. Only variant sets which belong to this dataset will be returned.
"A String",
],
- "pageSize": 42, # The maximum number of variant sets to return in a request.
+ "pageSize": 42, # The maximum number of results to return in a single page. If unspecified, defaults to 1024.
}
@@ -427,9 +442,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -465,9 +483,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
@@ -495,9 +516,12 @@
"referenceBounds": [ # A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.
{ # ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.
"upperBound": "A String", # An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.
- "referenceName": "A String", # The reference the bound is associate with.
+ "referenceName": "A String", # The name of the reference associated with this reference bound.
},
],
+ "referenceSetId": "A String", # The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the referenceBounds describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the referenceBounds.
+ #
+ # For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', referenceBounds would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
"id": "A String", # The Google-generated ID of the variant set. Immutable.
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.