Clean and regen docs (#401)
diff --git a/docs/dyn/genomics_v1.variants.html b/docs/dyn/genomics_v1.variants.html
index 566c83f..5724154 100644
--- a/docs/dyn/genomics_v1.variants.html
+++ b/docs/dyn/genomics_v1.variants.html
@@ -178,8 +178,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -196,7 +195,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}
x__xgafv: string, V1 error format.
@@ -274,8 +274,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -292,7 +291,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}</pre>
</div>
@@ -411,8 +411,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -429,7 +428,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}</pre>
</div>
@@ -460,14 +460,8 @@
{ # The variant data import request.
"variantSetId": "A String", # Required. The variant set to which variant data should be imported.
- "normalizeReferenceNames": True or False, # Convert reference names to the canonical representation.
- # hg19 haploytypes (those reference names containing "_hap")
- # are not modified in any way.
- # All other reference names are modified according to the following rules:
- # The reference name is capitalized.
- # The "chr" prefix is dropped for all autosomes and sex chromsomes.
- # For example "chr17" becomes "17" and "chrX" becomes "X".
- # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
+ "format": "A String", # The format of the variant data being imported. If unspecified, defaults to
+ # to `VCF`.
"sourceUris": [ # A list of URIs referencing variant files in Google Cloud Storage. URIs can
# include wildcards [as described
# here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
@@ -479,8 +473,14 @@
# generated by the resulting import job.
"a_key": "A String",
},
- "format": "A String", # The format of the variant data being imported. If unspecified, defaults to
- # to `VCF`.
+ "normalizeReferenceNames": True or False, # Convert reference names to the canonical representation.
+ # hg19 haploytypes (those reference names containing "_hap")
+ # are not modified in any way.
+ # All other reference names are modified according to the following rules:
+ # The reference name is capitalized.
+ # The "chr" prefix is dropped for all autosomes and sex chromsomes.
+ # For example "chr17" becomes "17" and "chrX" becomes "X".
+ # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
}
x__xgafv: string, V1 error format.
@@ -513,7 +513,7 @@
# error message is needed, put the localized message in the error details or
# localize it in the client. The optional error details may contain arbitrary
# information about the error. There is a predefined set of error detail types
- # in the package `google.rpc` which can be used for common error conditions.
+ # in the package `google.rpc` that can be used for common error conditions.
#
# # Language mapping
#
@@ -536,7 +536,7 @@
# errors.
#
# - Workflow errors. A typical workflow has multiple steps. Each step may
- # have a `Status` message for error reporting purpose.
+ # have a `Status` message for error reporting.
#
# - Batch operations. If a client uses batch request and batch response, the
# `Status` message should be used directly inside batch response, one for
@@ -737,8 +737,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -755,7 +754,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
},
],
"infoMergeConfig": { # A mapping between info field keys and the InfoMergeOperations to
@@ -867,8 +867,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -885,7 +884,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}
x__xgafv: string, V1 error format.
@@ -967,8 +967,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -985,7 +984,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}</pre>
</div>
@@ -1018,16 +1018,16 @@
"pageToken": "A String", # The continuation token, which is used to page through large result sets.
# To get the next page of results, set this parameter to the value of
# `nextPageToken` from the previous response.
- "callSetIds": [ # Only return variant calls which belong to call sets with these ids.
- # Leaving this blank returns all variant calls. If a variant has no
- # calls belonging to any of these call sets, it won't be returned at all.
+ "variantSetIds": [ # At most one variant set ID must be provided. Only variants from this
+ # variant set will be returned. If omitted, a call set id must be included in
+ # the request.
"A String",
],
"variantName": "A String", # Only return variants which have exactly this name.
"referenceName": "A String", # Required. Only return variants in this reference sequence.
- "variantSetIds": [ # At most one variant set ID must be provided. Only variants from this
- # variant set will be returned. If omitted, a call set id must be included in
- # the request.
+ "callSetIds": [ # Only return variant calls which belong to call sets with these ids.
+ # Leaving this blank returns all variant calls. If a variant has no
+ # calls belonging to any of these call sets, it won't be returned at all.
"A String",
],
}
@@ -1112,8 +1112,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -1130,7 +1129,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
},
],
}</pre>