Update docs for 1.4.1 release
diff --git a/docs/dyn/genomics_v1beta2.variantsets.html b/docs/dyn/genomics_v1beta2.variantsets.html
index 56df3eb..8202903 100644
--- a/docs/dyn/genomics_v1beta2.variantsets.html
+++ b/docs/dyn/genomics_v1beta2.variantsets.html
@@ -118,13 +118,13 @@
The object takes the form of:
{ # The variant data export request.
- "bigqueryDataset": "A String", # The BigQuery dataset to export data to. Note that this is distinct from the Genomics concept of "dataset".
+ "bigqueryDataset": "A String", # Required. The BigQuery dataset to export data to. This dataset must already exist. Note that this is distinct from the Genomics concept of "dataset".
"format": "A String", # The format for the exported data.
"callSetIds": [ # If provided, only variant call information from the specified call sets will be exported. By default all variant calls are exported.
"A String",
],
- "projectNumber": "A String", # The Google Cloud project number that owns the destination BigQuery dataset. The caller must have WRITE access to this project. This project will also own the resulting export job.
- "bigqueryTable": "A String", # The BigQuery table to export data to. If the table doesn't exist, it will be created. If it already exists, it will be overwritten.
+ "projectNumber": "A String", # Required. The Google Cloud project number that owns the destination BigQuery dataset. The caller must have WRITE access to this project. This project will also own the resulting export job.
+ "bigqueryTable": "A String", # Required. The BigQuery table to export data to. If the table doesn't exist, it will be created. If it already exists, it will be overwritten.
}
@@ -157,7 +157,7 @@
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
- "info": { # Remaining structured metadata key-value pairs.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -185,10 +185,11 @@
The object takes the form of:
{ # The variant data import request.
- "sourceUris": [ # A list of URIs pointing at VCF files in Google Cloud Storage. See the VCF Specification for more details on the input format.
+ "normalizeReferenceNames": True or False, # Convert reference names to the canonical representation. hg19 haploytypes (those reference names containing "_hap") are not modified in any way. All other reference names are modified according to the following rules: The reference name is capitalized. The "chr" prefix is dropped for all autosomes and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X". All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
+ "sourceUris": [ # A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported.
"A String",
],
- "format": "A String", # The format of the variant data being imported.
+ "format": "A String", # The format of the variant data being imported. If unspecified, defaults to to "VCF".
}
@@ -214,7 +215,7 @@
{
"variants": [ # The variants to be merged with existing variants.
{ # A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set. Each of the calls on a variant represent a determination of genotype with respect to that variant. For example, a call might assign probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call belongs to a call set, which contains related calls typically from one sample.
- "info": { # A map of additional variant information.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -223,7 +224,7 @@
"end": "A String", # The end position (0-based) of this variant. This corresponds to the first base after the last base in the reference allele. So, the length of the reference allele is (end - start). This is useful for variants that don't explicitly give alternate bases, for example large deletions.
"calls": [ # The variant calls for this particular variant. Each one represents the determination of genotype with respect to this variant.
{ # A call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.
- "info": { # A map of additional variant call information.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -266,7 +267,7 @@
<pre>Updates a variant set's metadata. All other modifications are silently ignored. This method supports patch semantics.
Args:
- variantSetId: string, The ID of the variant to be updated. (required)
+ variantSetId: string, The ID of the variant to be updated (must already exist). (required)
body: object, The request body. (required)
The object takes the form of:
@@ -281,7 +282,7 @@
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
- "info": { # Remaining structured metadata key-value pairs.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -311,7 +312,7 @@
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
- "info": { # Remaining structured metadata key-value pairs.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -363,7 +364,7 @@
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
- "info": { # Remaining structured metadata key-value pairs.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -386,7 +387,7 @@
<pre>Updates a variant set's metadata. All other modifications are silently ignored.
Args:
- variantSetId: string, The ID of the variant to be updated. (required)
+ variantSetId: string, The ID of the variant to be updated (must already exist). (required)
body: object, The request body. (required)
The object takes the form of:
@@ -401,7 +402,7 @@
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
- "info": { # Remaining structured metadata key-value pairs.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],
@@ -431,7 +432,7 @@
"datasetId": "A String", # The dataset to which this variant set belongs. Immutable.
"metadata": [ # The metadata associated with this variant set.
{ # Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.
- "info": { # Remaining structured metadata key-value pairs.
+ "info": { # A string which maps to an array of values.
"a_key": [ # A string which maps to an array of values.
"A String",
],