Regen docs (#364)
diff --git a/docs/dyn/genomics_v1.references.html b/docs/dyn/genomics_v1.references.html
index eb91ff8..0644b04 100644
--- a/docs/dyn/genomics_v1.references.html
+++ b/docs/dyn/genomics_v1.references.html
@@ -81,76 +81,142 @@
<p class="toc_element">
<code><a href="#get">get(referenceId, x__xgafv=None)</a></code></p>
-<p class="firstline">Gets a reference. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).</p>
+<p class="firstline">Gets a reference.</p>
<p class="toc_element">
<code><a href="#search">search(body, x__xgafv=None)</a></code></p>
-<p class="firstline">Searches for references which match the given criteria. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).</p>
+<p class="firstline">Searches for references which match the given criteria.</p>
+<p class="toc_element">
+ <code><a href="#search_next">search_next(previous_request, previous_response)</a></code></p>
+<p class="firstline">Retrieves the next page of results.</p>
<h3>Method Details</h3>
<div class="method">
<code class="details" id="get">get(referenceId, x__xgafv=None)</code>
- <pre>Gets a reference. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
+ <pre>Gets a reference.
+
+For the definitions of references and other genomics resources, see
+[Fundamentals of Google
+Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+
+Implements
+[GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
Args:
referenceId: string, The ID of the reference. (required)
x__xgafv: string, V1 error format.
+ Allowed values
+ 1 - v1 error format
+ 2 - v2 error format
Returns:
An object of the form:
- { # A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ { # A reference is a canonical assembled DNA sequence, intended to act as a
+ # reference coordinate space for other genomic annotations. A single reference
+ # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
+ # reference belongs to one or more reference sets.
+ #
+ # For more genomics resource definitions, see [Fundamentals of Google
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
"name": "A String", # The name of this reference, for example `22`.
- "sourceUri": "A String", # The URI from which the sequence was obtained. Typically specifies a FASTA format file.
- "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`.
+ "sourceUri": "A String", # The URI from which the sequence was obtained. Typically specifies a FASTA
+ # format file.
+ "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
+ # with a version number, for example `GCF_000001405.26`.
"A String",
],
"length": "A String", # The length of this reference's sequence.
- "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
+ "md5checksum": "A String", # MD5 of the upper-case sequence excluding all whitespace characters (this
+ # is equivalent to SQ:M5 in SAM). This value is represented in lower case
+ # hexadecimal format.
"id": "A String", # The server-generated reference ID, unique across all references.
- "md5checksum": "A String", # MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.
+ "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
}</pre>
</div>
<div class="method">
<code class="details" id="search">search(body, x__xgafv=None)</code>
- <pre>Searches for references which match the given criteria. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
+ <pre>Searches for references which match the given criteria.
+
+For the definitions of references and other genomics resources, see
+[Fundamentals of Google
+Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+
+Implements
+[GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
Args:
body: object, The request body. (required)
The object takes the form of:
{
- "md5checksums": [ # If present, return references for which the md5checksum matches exactly.
+ "md5checksums": [ # If present, return references for which the
+ # md5checksum matches exactly.
"A String",
],
- "pageToken": "A String", # The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.
+ "pageToken": "A String", # The continuation token, which is used to page through large result sets.
+ # To get the next page of results, set this parameter to the value of
+ # `nextPageToken` from the previous response.
"referenceSetId": "A String", # If present, return only references which belong to this reference set.
- "accessions": [ # If present, return references for which a prefix of any of sourceAccessions match any of these strings. Accession numbers typically have a main number and a version, for example `GCF_000001405.26`.
+ "accessions": [ # If present, return references for which a prefix of any of
+ # sourceAccessions match
+ # any of these strings. Accession numbers typically have a main number and a
+ # version, for example `GCF_000001405.26`.
"A String",
],
- "pageSize": 42, # The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 4096.
+ "pageSize": 42, # The maximum number of results to return in a single page. If unspecified,
+ # defaults to 1024. The maximum value is 4096.
}
x__xgafv: string, V1 error format.
+ Allowed values
+ 1 - v1 error format
+ 2 - v2 error format
Returns:
An object of the form:
{
- "nextPageToken": "A String", # The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.
+ "nextPageToken": "A String", # The continuation token, which is used to page through large result sets.
+ # Provide this value in a subsequent request to return the next page of
+ # results. This field will be empty if there aren't any additional results.
"references": [ # The matching references.
- { # A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ { # A reference is a canonical assembled DNA sequence, intended to act as a
+ # reference coordinate space for other genomic annotations. A single reference
+ # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
+ # reference belongs to one or more reference sets.
+ #
+ # For more genomics resource definitions, see [Fundamentals of Google
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
"name": "A String", # The name of this reference, for example `22`.
- "sourceUri": "A String", # The URI from which the sequence was obtained. Typically specifies a FASTA format file.
- "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`.
+ "sourceUri": "A String", # The URI from which the sequence was obtained. Typically specifies a FASTA
+ # format file.
+ "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
+ # with a version number, for example `GCF_000001405.26`.
"A String",
],
"length": "A String", # The length of this reference's sequence.
- "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
+ "md5checksum": "A String", # MD5 of the upper-case sequence excluding all whitespace characters (this
+ # is equivalent to SQ:M5 in SAM). This value is represented in lower case
+ # hexadecimal format.
"id": "A String", # The server-generated reference ID, unique across all references.
- "md5checksum": "A String", # MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.
+ "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
},
],
}</pre>
</div>
+<div class="method">
+ <code class="details" id="search_next">search_next(previous_request, previous_response)</code>
+ <pre>Retrieves the next page of results.
+
+Args:
+ previous_request: The request for the previous page. (required)
+ previous_response: The response from the request for the previous page. (required)
+
+Returns:
+ A request object that you can call 'execute()' on to request the next
+ page. Returns None if there are no more items in the collection.
+ </pre>
+</div>
+
</body></html>
\ No newline at end of file