Regen docs (#364)
diff --git a/docs/dyn/genomics_v1.referencesets.html b/docs/dyn/genomics_v1.referencesets.html
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--- a/docs/dyn/genomics_v1.referencesets.html
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@@ -76,82 +76,163 @@
<h2>Instance Methods</h2>
<p class="toc_element">
<code><a href="#get">get(referenceSetId, x__xgafv=None)</a></code></p>
-<p class="firstline">Gets a reference set. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).</p>
+<p class="firstline">Gets a reference set.</p>
<p class="toc_element">
<code><a href="#search">search(body, x__xgafv=None)</a></code></p>
-<p class="firstline">Searches for reference sets which match the given criteria. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)</p>
+<p class="firstline">Searches for reference sets which match the given criteria.</p>
+<p class="toc_element">
+ <code><a href="#search_next">search_next(previous_request, previous_response)</a></code></p>
+<p class="firstline">Retrieves the next page of results.</p>
<h3>Method Details</h3>
<div class="method">
<code class="details" id="get">get(referenceSetId, x__xgafv=None)</code>
- <pre>Gets a reference set. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
+ <pre>Gets a reference set.
+
+For the definitions of references and other genomics resources, see
+[Fundamentals of Google
+Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+
+Implements
+[GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
Args:
referenceSetId: string, The ID of the reference set. (required)
x__xgafv: string, V1 error format.
+ Allowed values
+ 1 - v1 error format
+ 2 - v2 error format
Returns:
An object of the form:
- { # A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ { # A reference set is a set of references which typically comprise a reference
+ # assembly for a species, such as `GRCh38` which is representative
+ # of the human genome. A reference set defines a common coordinate space for
+ # comparing reference-aligned experimental data. A reference set contains 1 or
+ # more references.
+ #
+ # For more genomics resource definitions, see [Fundamentals of Google
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
"description": "A String", # Free text description of this reference set.
"sourceUri": "A String", # The URI from which the references were obtained.
- "referenceIds": [ # The IDs of the reference objects that are part of this set. `Reference.md5checksum` must be unique within this set.
+ "referenceIds": [ # The IDs of the reference objects that are part of this set.
+ # `Reference.md5checksum` must be unique within this set.
"A String",
],
"assemblyId": "A String", # Public id of this reference set, such as `GRCh37`.
- "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `NC_000001.11`.
+ "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
+ # with a version number, for example `NC_000001.11`.
"A String",
],
- "md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string `reference.md5checksum` (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format.
+ "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
+ # indicating the species which this reference set is intended to model. Note
+ # that contained references may specify a different `ncbiTaxonId`, as
+ # assemblies may contain reference sequences which do not belong to the
+ # modeled species, for example EBV in a human reference genome.
"id": "A String", # The server-generated reference set ID, unique across all reference sets.
- "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different `ncbiTaxonId`, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome.
+ "md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The
+ # checksum is computed by sorting all lower case hexidecimal string
+ # `reference.md5checksum` (for all reference in this set) in
+ # ascending lexicographic order, concatenating, and taking the MD5 of that
+ # value. The resulting value is represented in lower case hexadecimal format.
}</pre>
</div>
<div class="method">
<code class="details" id="search">search(body, x__xgafv=None)</code>
- <pre>Searches for reference sets which match the given criteria. For the definitions of references and other genomics resources, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics) Implements [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
+ <pre>Searches for reference sets which match the given criteria.
+
+For the definitions of references and other genomics resources, see
+[Fundamentals of Google
+Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+
+Implements
+[GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
Args:
body: object, The request body. (required)
The object takes the form of:
{
- "md5checksums": [ # If present, return reference sets for which the md5checksum matches exactly.
+ "md5checksums": [ # If present, return reference sets for which the
+ # md5checksum matches exactly.
"A String",
],
- "assemblyId": "A String", # If present, return reference sets for which a substring of their `assemblyId` matches this string (case insensitive).
- "accessions": [ # If present, return reference sets for which a prefix of any of sourceAccessions match any of these strings. Accession numbers typically have a main number and a version, for example `NC_000001.11`.
+ "pageToken": "A String", # The continuation token, which is used to page through large result sets.
+ # To get the next page of results, set this parameter to the value of
+ # `nextPageToken` from the previous response.
+ "accessions": [ # If present, return reference sets for which a prefix of any of
+ # sourceAccessions
+ # match any of these strings. Accession numbers typically have a main number
+ # and a version, for example `NC_000001.11`.
"A String",
],
- "pageSize": 42, # The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 4096.
- "pageToken": "A String", # The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.
+ "pageSize": 42, # The maximum number of results to return in a single page. If unspecified,
+ # defaults to 1024. The maximum value is 4096.
+ "assemblyId": "A String", # If present, return reference sets for which a substring of their
+ # `assemblyId` matches this string (case insensitive).
}
x__xgafv: string, V1 error format.
+ Allowed values
+ 1 - v1 error format
+ 2 - v2 error format
Returns:
An object of the form:
{
- "nextPageToken": "A String", # The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.
+ "nextPageToken": "A String", # The continuation token, which is used to page through large result sets.
+ # Provide this value in a subsequent request to return the next page of
+ # results. This field will be empty if there aren't any additional results.
"referenceSets": [ # The matching references sets.
- { # A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references. For more genomics resource definitions, see [Fundamentals of Google Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
+ { # A reference set is a set of references which typically comprise a reference
+ # assembly for a species, such as `GRCh38` which is representative
+ # of the human genome. A reference set defines a common coordinate space for
+ # comparing reference-aligned experimental data. A reference set contains 1 or
+ # more references.
+ #
+ # For more genomics resource definitions, see [Fundamentals of Google
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
"description": "A String", # Free text description of this reference set.
"sourceUri": "A String", # The URI from which the references were obtained.
- "referenceIds": [ # The IDs of the reference objects that are part of this set. `Reference.md5checksum` must be unique within this set.
+ "referenceIds": [ # The IDs of the reference objects that are part of this set.
+ # `Reference.md5checksum` must be unique within this set.
"A String",
],
"assemblyId": "A String", # Public id of this reference set, such as `GRCh37`.
- "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `NC_000001.11`.
+ "sourceAccessions": [ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
+ # with a version number, for example `NC_000001.11`.
"A String",
],
- "md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string `reference.md5checksum` (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format.
+ "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
+ # indicating the species which this reference set is intended to model. Note
+ # that contained references may specify a different `ncbiTaxonId`, as
+ # assemblies may contain reference sequences which do not belong to the
+ # modeled species, for example EBV in a human reference genome.
"id": "A String", # The server-generated reference set ID, unique across all reference sets.
- "ncbiTaxonId": 42, # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different `ncbiTaxonId`, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome.
+ "md5checksum": "A String", # Order-independent MD5 checksum which identifies this reference set. The
+ # checksum is computed by sorting all lower case hexidecimal string
+ # `reference.md5checksum` (for all reference in this set) in
+ # ascending lexicographic order, concatenating, and taking the MD5 of that
+ # value. The resulting value is represented in lower case hexadecimal format.
},
],
}</pre>
</div>
+<div class="method">
+ <code class="details" id="search_next">search_next(previous_request, previous_response)</code>
+ <pre>Retrieves the next page of results.
+
+Args:
+ previous_request: The request for the previous page. (required)
+ previous_response: The response from the request for the previous page. (required)
+
+Returns:
+ A request object that you can call 'execute()' on to request the next
+ page. Returns None if there are no more items in the collection.
+ </pre>
+</div>
+
</body></html>
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