Regen docs (#373)
diff --git a/docs/dyn/genomics_v1.variants.html b/docs/dyn/genomics_v1.variants.html
index fe7b4a6..443ec74 100644
--- a/docs/dyn/genomics_v1.variants.html
+++ b/docs/dyn/genomics_v1.variants.html
@@ -178,8 +178,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -196,7 +195,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}
x__xgafv: string, V1 error format.
@@ -274,8 +274,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -292,7 +291,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}</pre>
</div>
@@ -411,8 +411,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -429,7 +428,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}</pre>
</div>
@@ -460,14 +460,8 @@
{ # The variant data import request.
"variantSetId": "A String", # Required. The variant set to which variant data should be imported.
- "normalizeReferenceNames": True or False, # Convert reference names to the canonical representation.
- # hg19 haploytypes (those reference names containing "_hap")
- # are not modified in any way.
- # All other reference names are modified according to the following rules:
- # The reference name is capitalized.
- # The "chr" prefix is dropped for all autosomes and sex chromsomes.
- # For example "chr17" becomes "17" and "chrX" becomes "X".
- # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
+ "format": "A String", # The format of the variant data being imported. If unspecified, defaults to
+ # to `VCF`.
"sourceUris": [ # A list of URIs referencing variant files in Google Cloud Storage. URIs can
# include wildcards [as described
# here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
@@ -479,8 +473,14 @@
# generated by the resulting import job.
"a_key": "A String",
},
- "format": "A String", # The format of the variant data being imported. If unspecified, defaults to
- # to `VCF`.
+ "normalizeReferenceNames": True or False, # Convert reference names to the canonical representation.
+ # hg19 haploytypes (those reference names containing "_hap")
+ # are not modified in any way.
+ # All other reference names are modified according to the following rules:
+ # The reference name is capitalized.
+ # The "chr" prefix is dropped for all autosomes and sex chromsomes.
+ # For example "chr17" becomes "17" and "chrX" becomes "X".
+ # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
}
x__xgafv: string, V1 error format.
@@ -493,16 +493,9 @@
{ # This resource represents a long-running operation that is the result of a
# network API call.
- "response": { # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an empty response is returned.
- "a_key": "", # Properties of the object. Contains field @type with type URL.
- },
"metadata": { # An OperationMetadata object. This will always be returned with the Operation.
"a_key": "", # Properties of the object. Contains field @type with type URL.
},
- "done": True or False, # If the value is `false`, it means the operation is still in progress.
- # If true, the operation is completed, and either `error` or `response` is
- # available.
- "name": "A String", # The server-assigned name, which is only unique within the same service that originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
"error": { # The `Status` type defines a logical error model that is suitable for different # The error result of the operation in case of failure or cancellation.
# programming environments, including REST APIs and RPC APIs. It is used by
# [gRPC](https://github.com/grpc). The error model is designed to be:
@@ -566,6 +559,13 @@
},
],
},
+ "done": True or False, # If the value is `false`, it means the operation is still in progress.
+ # If true, the operation is completed, and either `error` or `response` is
+ # available.
+ "response": { # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an empty response is returned.
+ "a_key": "", # Properties of the object. Contains field @type with type URL.
+ },
+ "name": "A String", # The server-assigned name, which is only unique within the same service that originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
}</pre>
</div>
@@ -737,8 +737,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -755,7 +754,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
},
],
"infoMergeConfig": { # A mapping between info field keys and the InfoMergeOperations to
@@ -867,8 +867,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -885,7 +884,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}
x__xgafv: string, V1 error format.
@@ -967,8 +967,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -985,7 +984,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
}</pre>
</div>
@@ -1009,25 +1009,25 @@
# the length of the reference.
"pageSize": 42, # The maximum number of variants to return in a single page. If unspecified,
# defaults to 5000. The maximum value is 10000.
- "pageToken": "A String", # The continuation token, which is used to page through large result sets.
- # To get the next page of results, set this parameter to the value of
- # `nextPageToken` from the previous response.
+ "start": "A String", # The beginning of the window (0-based, inclusive) for which
+ # overlapping variants should be returned. If unspecified, defaults to 0.
"maxCalls": 42, # The maximum number of calls to return in a single page. Note that this
# limit may be exceeded in the event that a matching variant contains more
# calls than the requested maximum. If unspecified, defaults to 5000. The
# maximum value is 10000.
- "start": "A String", # The beginning of the window (0-based, inclusive) for which
- # overlapping variants should be returned. If unspecified, defaults to 0.
- "callSetIds": [ # Only return variant calls which belong to call sets with these ids.
- # Leaving this blank returns all variant calls. If a variant has no
- # calls belonging to any of these call sets, it won't be returned at all.
+ "pageToken": "A String", # The continuation token, which is used to page through large result sets.
+ # To get the next page of results, set this parameter to the value of
+ # `nextPageToken` from the previous response.
+ "variantSetIds": [ # At most one variant set ID must be provided. Only variants from this
+ # variant set will be returned. If omitted, a call set id must be included in
+ # the request.
"A String",
],
"variantName": "A String", # Only return variants which have exactly this name.
"referenceName": "A String", # Required. Only return variants in this reference sequence.
- "variantSetIds": [ # At most one variant set ID must be provided. Only variants from this
- # variant set will be returned. If omitted, a call set id must be included in
- # the request.
+ "callSetIds": [ # Only return variant calls which belong to call sets with these ids.
+ # Leaving this blank returns all variant calls. If a variant has no
+ # calls belonging to any of these call sets, it won't be returned at all.
"A String",
],
}
@@ -1112,8 +1112,7 @@
},
],
"created": "A String", # The date this variant was created, in milliseconds from the epoch.
- "referenceBases": "A String", # The reference bases for this variant. They start at the given
- # position.
+ "id": "A String", # The server-generated variant ID, unique across all variants.
"filter": [ # A list of filters (normally quality filters) this variant has failed.
# `PASS` indicates this variant has passed all filters.
"A String",
@@ -1130,7 +1129,8 @@
# (such as `chr20` or `X`)
"quality": 3.14, # A measure of how likely this variant is to be real.
# A higher value is better.
- "id": "A String", # The server-generated variant ID, unique across all variants.
+ "referenceBases": "A String", # The reference bases for this variant. They start at the given
+ # position.
},
],
}</pre>