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gerrit-public.fairphone.software / platform / external / python / google-api-python-client / c30d2b5d4478b230246dcaaa9f1c533ca3304387 / . / docs / dyn / genomics_v1.callsets.html
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74
75<h1><a href="genomics_v1.html">Genomics API</a> . <a href="genomics_v1.callsets.html">callsets</a></h1>
76<h2>Instance Methods</h2>
77<p class="toc_element">
78 <code><a href="#create">create(body, x__xgafv=None)</a></code></p>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]79<p class="firstline">Creates a new call set.</p>
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]80<p class="toc_element">
81 <code><a href="#delete">delete(callSetId, x__xgafv=None)</a></code></p>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]82<p class="firstline">Deletes a call set.</p>
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]83<p class="toc_element">
84 <code><a href="#get">get(callSetId, x__xgafv=None)</a></code></p>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]85<p class="firstline">Gets a call set by ID.</p>
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]86<p class="toc_element">
87 <code><a href="#patch">patch(callSetId, body, updateMask=None, x__xgafv=None)</a></code></p>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]88<p class="firstline">Updates a call set.</p>
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]89<p class="toc_element">
90 <code><a href="#search">search(body, x__xgafv=None)</a></code></p>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]91<p class="firstline">Gets a list of call sets matching the criteria.</p>
92<p class="toc_element">
93 <code><a href="#search_next">search_next(previous_request, previous_response)</a></code></p>
94<p class="firstline">Retrieves the next page of results.</p>
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]95<h3>Method Details</h3>
96<div class="method">
97 <code class="details" id="create">create(body, x__xgafv=None)</code>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]98 <pre>Creates a new call set.
99
100For the definitions of call sets and other genomics resources, see
101[Fundamentals of Google
102Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]103
104Args:
105 body: object, The request body. (required)
106 The object takes the form of:
107
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]108{ # A call set is a collection of variant calls, typically for one sample. It
109 # belongs to a variant set.
110 #
111 # For more genomics resource definitions, see [Fundamentals of Google
112 # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
113 "info": { # A map of additional call set information. This must be of the form
114 # map<string, string[]> (string key mapping to a list of string values).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]115 "a_key": [
116 "",
117 ],
118 },
119 "name": "A String", # The call set name.
120 "created": "A String", # The date this call set was created in milliseconds from the epoch.
121 "sampleId": "A String", # The sample ID this call set corresponds to.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]122 "variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
123 # have exactly length one, as a call set belongs to a single variant set.
124 # This field is repeated for compatibility with the
125 # [GA4GH 0.5.1
126 # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]127 "A String",
128 ],
129 "id": "A String", # The server-generated call set ID, unique across all call sets.
130}
131
132 x__xgafv: string, V1 error format.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]133 Allowed values
134 1 - v1 error format
135 2 - v2 error format
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]136
137Returns:
138 An object of the form:
139
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]140 { # A call set is a collection of variant calls, typically for one sample. It
141 # belongs to a variant set.
142 #
143 # For more genomics resource definitions, see [Fundamentals of Google
144 # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
145 "info": { # A map of additional call set information. This must be of the form
146 # map<string, string[]> (string key mapping to a list of string values).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]147 "a_key": [
148 "",
149 ],
150 },
151 "name": "A String", # The call set name.
152 "created": "A String", # The date this call set was created in milliseconds from the epoch.
153 "sampleId": "A String", # The sample ID this call set corresponds to.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]154 "variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
155 # have exactly length one, as a call set belongs to a single variant set.
156 # This field is repeated for compatibility with the
157 # [GA4GH 0.5.1
158 # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]159 "A String",
160 ],
161 "id": "A String", # The server-generated call set ID, unique across all call sets.
162 }</pre>
163</div>
164
165<div class="method">
166 <code class="details" id="delete">delete(callSetId, x__xgafv=None)</code>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]167 <pre>Deletes a call set.
168
169For the definitions of call sets and other genomics resources, see
170[Fundamentals of Google
171Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]172
173Args:
174 callSetId: string, The ID of the call set to be deleted. (required)
175 x__xgafv: string, V1 error format.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]176 Allowed values
177 1 - v1 error format
178 2 - v2 error format
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]179
180Returns:
181 An object of the form:
182
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]183 { # A generic empty message that you can re-use to avoid defining duplicated
184 # empty messages in your APIs. A typical example is to use it as the request
185 # or the response type of an API method. For instance:
186 #
187 # service Foo {
188 # rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
189 # }
190 #
191 # The JSON representation for `Empty` is empty JSON object `{}`.
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]192 }</pre>
193</div>
194
195<div class="method">
196 <code class="details" id="get">get(callSetId, x__xgafv=None)</code>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]197 <pre>Gets a call set by ID.
198
199For the definitions of call sets and other genomics resources, see
200[Fundamentals of Google
201Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]202
203Args:
204 callSetId: string, The ID of the call set. (required)
205 x__xgafv: string, V1 error format.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]206 Allowed values
207 1 - v1 error format
208 2 - v2 error format
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]209
210Returns:
211 An object of the form:
212
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]213 { # A call set is a collection of variant calls, typically for one sample. It
214 # belongs to a variant set.
215 #
216 # For more genomics resource definitions, see [Fundamentals of Google
217 # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
218 "info": { # A map of additional call set information. This must be of the form
219 # map<string, string[]> (string key mapping to a list of string values).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]220 "a_key": [
221 "",
222 ],
223 },
224 "name": "A String", # The call set name.
225 "created": "A String", # The date this call set was created in milliseconds from the epoch.
226 "sampleId": "A String", # The sample ID this call set corresponds to.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]227 "variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
228 # have exactly length one, as a call set belongs to a single variant set.
229 # This field is repeated for compatibility with the
230 # [GA4GH 0.5.1
231 # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]232 "A String",
233 ],
234 "id": "A String", # The server-generated call set ID, unique across all call sets.
235 }</pre>
236</div>
237
238<div class="method">
239 <code class="details" id="patch">patch(callSetId, body, updateMask=None, x__xgafv=None)</code>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]240 <pre>Updates a call set.
241
242For the definitions of call sets and other genomics resources, see
243[Fundamentals of Google
244Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
245
246This method supports patch semantics.
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]247
248Args:
249 callSetId: string, The ID of the call set to be updated. (required)
250 body: object, The request body. (required)
251 The object takes the form of:
252
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]253{ # A call set is a collection of variant calls, typically for one sample. It
254 # belongs to a variant set.
255 #
256 # For more genomics resource definitions, see [Fundamentals of Google
257 # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
258 "info": { # A map of additional call set information. This must be of the form
259 # map<string, string[]> (string key mapping to a list of string values).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]260 "a_key": [
261 "",
262 ],
263 },
264 "name": "A String", # The call set name.
265 "created": "A String", # The date this call set was created in milliseconds from the epoch.
266 "sampleId": "A String", # The sample ID this call set corresponds to.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]267 "variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
268 # have exactly length one, as a call set belongs to a single variant set.
269 # This field is repeated for compatibility with the
270 # [GA4GH 0.5.1
271 # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]272 "A String",
273 ],
274 "id": "A String", # The server-generated call set ID, unique across all call sets.
275}
276
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]277 updateMask: string, An optional mask specifying which fields to update. At this time, the only
278mutable field is name. The only
279acceptable value is "name". If unspecified, all mutable fields will be
280updated.
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]281 x__xgafv: string, V1 error format.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]282 Allowed values
283 1 - v1 error format
284 2 - v2 error format
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]285
286Returns:
287 An object of the form:
288
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]289 { # A call set is a collection of variant calls, typically for one sample. It
290 # belongs to a variant set.
291 #
292 # For more genomics resource definitions, see [Fundamentals of Google
293 # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
294 "info": { # A map of additional call set information. This must be of the form
295 # map<string, string[]> (string key mapping to a list of string values).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]296 "a_key": [
297 "",
298 ],
299 },
300 "name": "A String", # The call set name.
301 "created": "A String", # The date this call set was created in milliseconds from the epoch.
302 "sampleId": "A String", # The sample ID this call set corresponds to.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]303 "variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
304 # have exactly length one, as a call set belongs to a single variant set.
305 # This field is repeated for compatibility with the
306 # [GA4GH 0.5.1
307 # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]308 "A String",
309 ],
310 "id": "A String", # The server-generated call set ID, unique across all call sets.
311 }</pre>
312</div>
313
314<div class="method">
315 <code class="details" id="search">search(body, x__xgafv=None)</code>
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]316 <pre>Gets a list of call sets matching the criteria.
317
318For the definitions of call sets and other genomics resources, see
319[Fundamentals of Google
320Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
321
322Implements
323[GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]324
325Args:
326 body: object, The request body. (required)
327 The object takes the form of:
328
329{ # The call set search request.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]330 "pageToken": "A String", # The continuation token, which is used to page through large result sets.
331 # To get the next page of results, set this parameter to the value of
332 # `nextPageToken` from the previous response.
333 "variantSetIds": [ # Restrict the query to call sets within the given variant sets. At least one
334 # ID must be provided.
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]335 "A String",
336 ],
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]337 "name": "A String", # Only return call sets for which a substring of the name matches this
338 # string.
339 "pageSize": 42, # The maximum number of results to return in a single page. If unspecified,
340 # defaults to 1024.
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]341 }
342
343 x__xgafv: string, V1 error format.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]344 Allowed values
345 1 - v1 error format
346 2 - v2 error format
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]347
348Returns:
349 An object of the form:
350
351 { # The call set search response.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]352 "nextPageToken": "A String", # The continuation token, which is used to page through large result sets.
353 # Provide this value in a subsequent request to return the next page of
354 # results. This field will be empty if there aren't any additional results.
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]355 "callSets": [ # The list of matching call sets.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]356 { # A call set is a collection of variant calls, typically for one sample. It
357 # belongs to a variant set.
358 #
359 # For more genomics resource definitions, see [Fundamentals of Google
360 # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
361 "info": { # A map of additional call set information. This must be of the form
362 # map<string, string[]> (string key mapping to a list of string values).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]363 "a_key": [
364 "",
365 ],
366 },
367 "name": "A String", # The call set name.
368 "created": "A String", # The date this call set was created in milliseconds from the epoch.
369 "sampleId": "A String", # The sample ID this call set corresponds to.
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]370 "variantSetIds": [ # The IDs of the variant sets this call set belongs to. This field must
371 # have exactly length one, as a call set belongs to a single variant set.
372 # This field is repeated for compatibility with the
373 # [GA4GH 0.5.1
374 # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]375 "A String",
376 ],
377 "id": "A String", # The server-generated call set ID, unique across all call sets.
378 },
379 ],
380 }</pre>
381</div>
382
Sai Cheemalapatic30d2b52017-03-13 12:12:03 -0400[diff] [blame^]383<div class="method">
384 <code class="details" id="search_next">search_next(previous_request, previous_response)</code>
385 <pre>Retrieves the next page of results.
386
387Args:
388 previous_request: The request for the previous page. (required)
389 previous_response: The response from the request for the previous page. (required)
390
391Returns:
392 A request object that you can call 'execute()' on to request the next
393 page. Returns None if there are no more items in the collection.
394 </pre>
395</div>
396
Takashi Matsuo06694102015-09-11 13:55:40 -0700[diff] [blame]397</body></html>