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Raymond Hettingerc46cb2a2004-04-19 19:06:21 +00001# -*- coding: Latin-1 -*-
2
3"""Heap queue algorithm (a.k.a. priority queue).
4
5Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for
6all k, counting elements from 0. For the sake of comparison,
7non-existing elements are considered to be infinite. The interesting
8property of a heap is that a[0] is always its smallest element.
9
10Usage:
11
12heap = [] # creates an empty heap
13heappush(heap, item) # pushes a new item on the heap
14item = heappop(heap) # pops the smallest item from the heap
15item = heap[0] # smallest item on the heap without popping it
16heapify(x) # transforms list into a heap, in-place, in linear time
17item = heapreplace(heap, item) # pops and returns smallest item, and adds
18 # new item; the heap size is unchanged
19
20Our API differs from textbook heap algorithms as follows:
21
22- We use 0-based indexing. This makes the relationship between the
23 index for a node and the indexes for its children slightly less
24 obvious, but is more suitable since Python uses 0-based indexing.
25
26- Our heappop() method returns the smallest item, not the largest.
27
28These two make it possible to view the heap as a regular Python list
29without surprises: heap[0] is the smallest item, and heap.sort()
30maintains the heap invariant!
31"""
32
Raymond Hettinger33ecffb2004-06-10 05:03:17 +000033# Original code by Kevin O'Connor, augmented by Tim Peters and Raymond Hettinger
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +000034
35__about__ = """Heap queues
36
37[explanation by François Pinard]
38
39Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for
40all k, counting elements from 0. For the sake of comparison,
41non-existing elements are considered to be infinite. The interesting
42property of a heap is that a[0] is always its smallest element.
43
44The strange invariant above is meant to be an efficient memory
45representation for a tournament. The numbers below are `k', not a[k]:
46
47 0
48
49 1 2
50
51 3 4 5 6
52
53 7 8 9 10 11 12 13 14
54
55 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30
56
57
58In the tree above, each cell `k' is topping `2*k+1' and `2*k+2'. In
59an usual binary tournament we see in sports, each cell is the winner
60over the two cells it tops, and we can trace the winner down the tree
61to see all opponents s/he had. However, in many computer applications
62of such tournaments, we do not need to trace the history of a winner.
63To be more memory efficient, when a winner is promoted, we try to
64replace it by something else at a lower level, and the rule becomes
65that a cell and the two cells it tops contain three different items,
66but the top cell "wins" over the two topped cells.
67
68If this heap invariant is protected at all time, index 0 is clearly
69the overall winner. The simplest algorithmic way to remove it and
70find the "next" winner is to move some loser (let's say cell 30 in the
71diagram above) into the 0 position, and then percolate this new 0 down
72the tree, exchanging values, until the invariant is re-established.
73This is clearly logarithmic on the total number of items in the tree.
74By iterating over all items, you get an O(n ln n) sort.
75
76A nice feature of this sort is that you can efficiently insert new
77items while the sort is going on, provided that the inserted items are
78not "better" than the last 0'th element you extracted. This is
79especially useful in simulation contexts, where the tree holds all
80incoming events, and the "win" condition means the smallest scheduled
81time. When an event schedule other events for execution, they are
82scheduled into the future, so they can easily go into the heap. So, a
83heap is a good structure for implementing schedulers (this is what I
84used for my MIDI sequencer :-).
85
86Various structures for implementing schedulers have been extensively
87studied, and heaps are good for this, as they are reasonably speedy,
88the speed is almost constant, and the worst case is not much different
89than the average case. However, there are other representations which
90are more efficient overall, yet the worst cases might be terrible.
91
92Heaps are also very useful in big disk sorts. You most probably all
93know that a big sort implies producing "runs" (which are pre-sorted
94sequences, which size is usually related to the amount of CPU memory),
95followed by a merging passes for these runs, which merging is often
96very cleverly organised[1]. It is very important that the initial
97sort produces the longest runs possible. Tournaments are a good way
98to that. If, using all the memory available to hold a tournament, you
99replace and percolate items that happen to fit the current run, you'll
100produce runs which are twice the size of the memory for random input,
101and much better for input fuzzily ordered.
102
103Moreover, if you output the 0'th item on disk and get an input which
104may not fit in the current tournament (because the value "wins" over
105the last output value), it cannot fit in the heap, so the size of the
106heap decreases. The freed memory could be cleverly reused immediately
107for progressively building a second heap, which grows at exactly the
108same rate the first heap is melting. When the first heap completely
109vanishes, you switch heaps and start a new run. Clever and quite
110effective!
111
112In a word, heaps are useful memory structures to know. I use them in
113a few applications, and I think it is good to keep a `heap' module
114around. :-)
115
116--------------------
117[1] The disk balancing algorithms which are current, nowadays, are
118more annoying than clever, and this is a consequence of the seeking
119capabilities of the disks. On devices which cannot seek, like big
120tape drives, the story was quite different, and one had to be very
121clever to ensure (far in advance) that each tape movement will be the
122most effective possible (that is, will best participate at
123"progressing" the merge). Some tapes were even able to read
124backwards, and this was also used to avoid the rewinding time.
125Believe me, real good tape sorts were quite spectacular to watch!
126From all times, sorting has always been a Great Art! :-)
127"""
128
Thomas Wouterscf297e42007-02-23 15:07:44 +0000129__all__ = ['heappush', 'heappop', 'heapify', 'heapreplace', 'merge',
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000130 'nlargest', 'nsmallest', 'heappushpop']
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000131
Raymond Hettinger736c0ab2008-03-13 02:09:15 +0000132from itertools import islice, repeat, count, tee
Thomas Wouters902d6eb2007-01-09 23:18:33 +0000133from operator import itemgetter, neg
Raymond Hettingerb25aa362004-06-12 08:33:36 +0000134import bisect
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000135
136def heappush(heap, item):
137 """Push item onto heap, maintaining the heap invariant."""
138 heap.append(item)
139 _siftdown(heap, 0, len(heap)-1)
140
141def heappop(heap):
142 """Pop the smallest item off the heap, maintaining the heap invariant."""
143 lastelt = heap.pop() # raises appropriate IndexError if heap is empty
144 if heap:
145 returnitem = heap[0]
146 heap[0] = lastelt
147 _siftup(heap, 0)
148 else:
149 returnitem = lastelt
150 return returnitem
151
152def heapreplace(heap, item):
153 """Pop and return the current smallest value, and add the new item.
154
155 This is more efficient than heappop() followed by heappush(), and can be
156 more appropriate when using a fixed-size heap. Note that the value
157 returned may be larger than item! That constrains reasonable uses of
Raymond Hettinger8158e842004-09-06 07:04:09 +0000158 this routine unless written as part of a conditional replacement:
Raymond Hettinger28224f82004-06-20 09:07:53 +0000159
Raymond Hettinger8158e842004-09-06 07:04:09 +0000160 if item > heap[0]:
161 item = heapreplace(heap, item)
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000162 """
163 returnitem = heap[0] # raises appropriate IndexError if heap is empty
164 heap[0] = item
165 _siftup(heap, 0)
166 return returnitem
167
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000168def heappushpop(heap, item):
169 """Fast version of a heappush followed by a heappop."""
Georg Brandlf78e02b2008-06-10 17:40:04 +0000170 if heap and heap[0] < item:
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000171 item, heap[0] = heap[0], item
172 _siftup(heap, 0)
173 return item
174
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000175def heapify(x):
176 """Transform list into a heap, in-place, in O(len(heap)) time."""
177 n = len(x)
178 # Transform bottom-up. The largest index there's any point to looking at
179 # is the largest with a child index in-range, so must have 2*i + 1 < n,
180 # or i < (n-1)/2. If n is even = 2*j, this is (2*j-1)/2 = j-1/2 so
181 # j-1 is the largest, which is n//2 - 1. If n is odd = 2*j+1, this is
182 # (2*j+1-1)/2 = j so j-1 is the largest, and that's again n//2-1.
Guido van Rossum805365e2007-05-07 22:24:25 +0000183 for i in reversed(range(n//2)):
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000184 _siftup(x, i)
185
Raymond Hettingere1defa42004-11-29 05:54:48 +0000186def nlargest(n, iterable):
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000187 """Find the n largest elements in a dataset.
188
189 Equivalent to: sorted(iterable, reverse=True)[:n]
190 """
191 it = iter(iterable)
192 result = list(islice(it, n))
193 if not result:
194 return result
195 heapify(result)
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000196 _heappushpop = heappushpop
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000197 for elem in it:
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000198 heappushpop(result, elem)
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000199 result.sort(reverse=True)
200 return result
201
Raymond Hettingere1defa42004-11-29 05:54:48 +0000202def nsmallest(n, iterable):
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000203 """Find the n smallest elements in a dataset.
204
205 Equivalent to: sorted(iterable)[:n]
206 """
Raymond Hettingerb25aa362004-06-12 08:33:36 +0000207 if hasattr(iterable, '__len__') and n * 10 <= len(iterable):
208 # For smaller values of n, the bisect method is faster than a minheap.
209 # It is also memory efficient, consuming only n elements of space.
210 it = iter(iterable)
211 result = sorted(islice(it, 0, n))
212 if not result:
213 return result
214 insort = bisect.insort
215 pop = result.pop
216 los = result[-1] # los --> Largest of the nsmallest
217 for elem in it:
218 if los <= elem:
219 continue
220 insort(result, elem)
221 pop()
222 los = result[-1]
223 return result
224 # An alternative approach manifests the whole iterable in memory but
225 # saves comparisons by heapifying all at once. Also, saves time
226 # over bisect.insort() which has O(n) data movement time for every
227 # insertion. Finding the n smallest of an m length iterable requires
228 # O(m) + O(n log m) comparisons.
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000229 h = list(iterable)
230 heapify(h)
Guido van Rossumc1f779c2007-07-03 08:25:58 +0000231 return list(map(heappop, repeat(h, min(n, len(h)))))
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000232
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000233# 'heap' is a heap at all indices >= startpos, except possibly for pos. pos
234# is the index of a leaf with a possibly out-of-order value. Restore the
235# heap invariant.
236def _siftdown(heap, startpos, pos):
237 newitem = heap[pos]
238 # Follow the path to the root, moving parents down until finding a place
239 # newitem fits.
240 while pos > startpos:
241 parentpos = (pos - 1) >> 1
242 parent = heap[parentpos]
Georg Brandlf78e02b2008-06-10 17:40:04 +0000243 if newitem < parent:
244 heap[pos] = parent
245 pos = parentpos
246 continue
247 break
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000248 heap[pos] = newitem
249
250# The child indices of heap index pos are already heaps, and we want to make
251# a heap at index pos too. We do this by bubbling the smaller child of
252# pos up (and so on with that child's children, etc) until hitting a leaf,
253# then using _siftdown to move the oddball originally at index pos into place.
254#
255# We *could* break out of the loop as soon as we find a pos where newitem <=
256# both its children, but turns out that's not a good idea, and despite that
257# many books write the algorithm that way. During a heap pop, the last array
258# element is sifted in, and that tends to be large, so that comparing it
259# against values starting from the root usually doesn't pay (= usually doesn't
260# get us out of the loop early). See Knuth, Volume 3, where this is
261# explained and quantified in an exercise.
262#
263# Cutting the # of comparisons is important, since these routines have no
264# way to extract "the priority" from an array element, so that intelligence
265# is likely to be hiding in custom __cmp__ methods, or in array elements
266# storing (priority, record) tuples. Comparisons are thus potentially
267# expensive.
268#
269# On random arrays of length 1000, making this change cut the number of
270# comparisons made by heapify() a little, and those made by exhaustive
271# heappop() a lot, in accord with theory. Here are typical results from 3
272# runs (3 just to demonstrate how small the variance is):
273#
274# Compares needed by heapify Compares needed by 1000 heappops
275# -------------------------- --------------------------------
276# 1837 cut to 1663 14996 cut to 8680
277# 1855 cut to 1659 14966 cut to 8678
278# 1847 cut to 1660 15024 cut to 8703
279#
280# Building the heap by using heappush() 1000 times instead required
281# 2198, 2148, and 2219 compares: heapify() is more efficient, when
282# you can use it.
283#
284# The total compares needed by list.sort() on the same lists were 8627,
285# 8627, and 8632 (this should be compared to the sum of heapify() and
286# heappop() compares): list.sort() is (unsurprisingly!) more efficient
287# for sorting.
288
289def _siftup(heap, pos):
290 endpos = len(heap)
291 startpos = pos
292 newitem = heap[pos]
293 # Bubble up the smaller child until hitting a leaf.
294 childpos = 2*pos + 1 # leftmost child position
295 while childpos < endpos:
296 # Set childpos to index of smaller child.
297 rightpos = childpos + 1
Georg Brandlf78e02b2008-06-10 17:40:04 +0000298 if rightpos < endpos and not heap[childpos] < heap[rightpos]:
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000299 childpos = rightpos
300 # Move the smaller child up.
301 heap[pos] = heap[childpos]
302 pos = childpos
303 childpos = 2*pos + 1
304 # The leaf at pos is empty now. Put newitem there, and bubble it up
305 # to its final resting place (by sifting its parents down).
306 heap[pos] = newitem
307 _siftdown(heap, startpos, pos)
308
309# If available, use C implementation
310try:
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000311 from _heapq import heappush, heappop, heapify, heapreplace, nlargest, nsmallest, heappushpop
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000312except ImportError:
313 pass
314
Thomas Wouterscf297e42007-02-23 15:07:44 +0000315def merge(*iterables):
316 '''Merge multiple sorted inputs into a single sorted output.
317
Guido van Rossumd8faa362007-04-27 19:54:29 +0000318 Similar to sorted(itertools.chain(*iterables)) but returns a generator,
Thomas Wouterscf297e42007-02-23 15:07:44 +0000319 does not pull the data into memory all at once, and assumes that each of
320 the input streams is already sorted (smallest to largest).
321
322 >>> list(merge([1,3,5,7], [0,2,4,8], [5,10,15,20], [], [25]))
323 [0, 1, 2, 3, 4, 5, 5, 7, 8, 10, 15, 20, 25]
324
325 '''
326 _heappop, _heapreplace, _StopIteration = heappop, heapreplace, StopIteration
327
328 h = []
329 h_append = h.append
330 for itnum, it in enumerate(map(iter, iterables)):
331 try:
Georg Brandla18af4e2007-04-21 15:47:16 +0000332 next = it.__next__
Thomas Wouterscf297e42007-02-23 15:07:44 +0000333 h_append([next(), itnum, next])
334 except _StopIteration:
335 pass
336 heapify(h)
337
338 while 1:
339 try:
340 while 1:
341 v, itnum, next = s = h[0] # raises IndexError when h is empty
342 yield v
343 s[0] = next() # raises StopIteration when exhausted
344 _heapreplace(h, s) # restore heap condition
345 except _StopIteration:
346 _heappop(h) # remove empty iterator
347 except IndexError:
348 return
349
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000350# Extend the implementations of nsmallest and nlargest to use a key= argument
351_nsmallest = nsmallest
352def nsmallest(n, iterable, key=None):
353 """Find the n smallest elements in a dataset.
354
355 Equivalent to: sorted(iterable, key=key)[:n]
356 """
Georg Brandl3a9b0622009-01-03 22:07:57 +0000357 if key is None:
358 it = zip(iterable, count()) # decorate
359 result = _nsmallest(n, it)
360 return list(map(itemgetter(0), result)) # undecorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000361 in1, in2 = tee(iterable)
Georg Brandl3a9b0622009-01-03 22:07:57 +0000362 it = zip(map(key, in1), count(), in2) # decorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000363 result = _nsmallest(n, it)
Guido van Rossumc1f779c2007-07-03 08:25:58 +0000364 return list(map(itemgetter(2), result)) # undecorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000365
366_nlargest = nlargest
367def nlargest(n, iterable, key=None):
368 """Find the n largest elements in a dataset.
369
370 Equivalent to: sorted(iterable, key=key, reverse=True)[:n]
371 """
Georg Brandl3a9b0622009-01-03 22:07:57 +0000372 if key is None:
373 it = zip(iterable, map(neg, count())) # decorate
374 result = _nlargest(n, it)
375 return list(map(itemgetter(0), result)) # undecorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000376 in1, in2 = tee(iterable)
Georg Brandl3a9b0622009-01-03 22:07:57 +0000377 it = zip(map(key, in1), map(neg, count()), in2) # decorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000378 result = _nlargest(n, it)
Guido van Rossumc1f779c2007-07-03 08:25:58 +0000379 return list(map(itemgetter(2), result)) # undecorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000380
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000381if __name__ == "__main__":
382 # Simple sanity test
383 heap = []
384 data = [1, 3, 5, 7, 9, 2, 4, 6, 8, 0]
385 for item in data:
386 heappush(heap, item)
387 sort = []
388 while heap:
389 sort.append(heappop(heap))
Guido van Rossumbe19ed72007-02-09 05:37:30 +0000390 print(sort)
Thomas Wouterscf297e42007-02-23 15:07:44 +0000391
392 import doctest
393 doctest.testmod()