| /* |
| pybind11/numpy.h: Basic NumPy support, vectorize() wrapper |
| |
| Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch> |
| |
| All rights reserved. Use of this source code is governed by a |
| BSD-style license that can be found in the LICENSE file. |
| */ |
| |
| #pragma once |
| |
| #include "pybind11.h" |
| #include "complex.h" |
| #include <numeric> |
| #include <algorithm> |
| #include <array> |
| #include <cstdlib> |
| #include <cstring> |
| #include <sstream> |
| #include <string> |
| #include <initializer_list> |
| #include <functional> |
| #include <utility> |
| #include <typeindex> |
| |
| #if defined(_MSC_VER) |
| # pragma warning(push) |
| # pragma warning(disable: 4127) // warning C4127: Conditional expression is constant |
| #endif |
| |
| /* This will be true on all flat address space platforms and allows us to reduce the |
| whole npy_intp / size_t / Py_intptr_t business down to just size_t for all size |
| and dimension types (e.g. shape, strides, indexing), instead of inflicting this |
| upon the library user. */ |
| static_assert(sizeof(size_t) == sizeof(Py_intptr_t), "size_t != Py_intptr_t"); |
| |
| NAMESPACE_BEGIN(pybind11) |
| NAMESPACE_BEGIN(detail) |
| template <typename type, typename SFINAE = void> struct npy_format_descriptor { }; |
| template <typename type> struct is_pod_struct; |
| |
| struct PyArrayDescr_Proxy { |
| PyObject_HEAD |
| PyObject *typeobj; |
| char kind; |
| char type; |
| char byteorder; |
| char flags; |
| int type_num; |
| int elsize; |
| int alignment; |
| char *subarray; |
| PyObject *fields; |
| PyObject *names; |
| }; |
| |
| struct PyArray_Proxy { |
| PyObject_HEAD |
| char *data; |
| int nd; |
| ssize_t *dimensions; |
| ssize_t *strides; |
| PyObject *base; |
| PyObject *descr; |
| int flags; |
| }; |
| |
| struct PyVoidScalarObject_Proxy { |
| PyObject_VAR_HEAD |
| char *obval; |
| PyArrayDescr_Proxy *descr; |
| int flags; |
| PyObject *base; |
| }; |
| |
| struct numpy_type_info { |
| PyObject* dtype_ptr; |
| std::string format_str; |
| }; |
| |
| struct numpy_internals { |
| std::unordered_map<std::type_index, numpy_type_info> registered_dtypes; |
| |
| numpy_type_info *get_type_info(const std::type_info& tinfo, bool throw_if_missing = true) { |
| auto it = registered_dtypes.find(std::type_index(tinfo)); |
| if (it != registered_dtypes.end()) |
| return &(it->second); |
| if (throw_if_missing) |
| pybind11_fail(std::string("NumPy type info missing for ") + tinfo.name()); |
| return nullptr; |
| } |
| |
| template<typename T> numpy_type_info *get_type_info(bool throw_if_missing = true) { |
| return get_type_info(typeid(typename std::remove_cv<T>::type), throw_if_missing); |
| } |
| }; |
| |
| inline PYBIND11_NOINLINE void load_numpy_internals(numpy_internals* &ptr) { |
| ptr = &get_or_create_shared_data<numpy_internals>("_numpy_internals"); |
| } |
| |
| inline numpy_internals& get_numpy_internals() { |
| static numpy_internals* ptr = nullptr; |
| if (!ptr) |
| load_numpy_internals(ptr); |
| return *ptr; |
| } |
| |
| struct npy_api { |
| enum constants { |
| NPY_C_CONTIGUOUS_ = 0x0001, |
| NPY_F_CONTIGUOUS_ = 0x0002, |
| NPY_ARRAY_OWNDATA_ = 0x0004, |
| NPY_ARRAY_FORCECAST_ = 0x0010, |
| NPY_ENSURE_ARRAY_ = 0x0040, |
| NPY_ARRAY_ALIGNED_ = 0x0100, |
| NPY_ARRAY_WRITEABLE_ = 0x0400, |
| NPY_BOOL_ = 0, |
| NPY_BYTE_, NPY_UBYTE_, |
| NPY_SHORT_, NPY_USHORT_, |
| NPY_INT_, NPY_UINT_, |
| NPY_LONG_, NPY_ULONG_, |
| NPY_LONGLONG_, NPY_ULONGLONG_, |
| NPY_FLOAT_, NPY_DOUBLE_, NPY_LONGDOUBLE_, |
| NPY_CFLOAT_, NPY_CDOUBLE_, NPY_CLONGDOUBLE_, |
| NPY_OBJECT_ = 17, |
| NPY_STRING_, NPY_UNICODE_, NPY_VOID_ |
| }; |
| |
| static npy_api& get() { |
| static npy_api api = lookup(); |
| return api; |
| } |
| |
| bool PyArray_Check_(PyObject *obj) const { |
| return (bool) PyObject_TypeCheck(obj, PyArray_Type_); |
| } |
| bool PyArrayDescr_Check_(PyObject *obj) const { |
| return (bool) PyObject_TypeCheck(obj, PyArrayDescr_Type_); |
| } |
| |
| PyObject *(*PyArray_DescrFromType_)(int); |
| PyObject *(*PyArray_NewFromDescr_) |
| (PyTypeObject *, PyObject *, int, Py_intptr_t *, |
| Py_intptr_t *, void *, int, PyObject *); |
| PyObject *(*PyArray_DescrNewFromType_)(int); |
| PyObject *(*PyArray_NewCopy_)(PyObject *, int); |
| PyTypeObject *PyArray_Type_; |
| PyTypeObject *PyVoidArrType_Type_; |
| PyTypeObject *PyArrayDescr_Type_; |
| PyObject *(*PyArray_DescrFromScalar_)(PyObject *); |
| PyObject *(*PyArray_FromAny_) (PyObject *, PyObject *, int, int, int, PyObject *); |
| int (*PyArray_DescrConverter_) (PyObject *, PyObject **); |
| bool (*PyArray_EquivTypes_) (PyObject *, PyObject *); |
| int (*PyArray_GetArrayParamsFromObject_)(PyObject *, PyObject *, char, PyObject **, int *, |
| Py_ssize_t *, PyObject **, PyObject *); |
| PyObject *(*PyArray_Squeeze_)(PyObject *); |
| private: |
| enum functions { |
| API_PyArray_Type = 2, |
| API_PyArrayDescr_Type = 3, |
| API_PyVoidArrType_Type = 39, |
| API_PyArray_DescrFromType = 45, |
| API_PyArray_DescrFromScalar = 57, |
| API_PyArray_FromAny = 69, |
| API_PyArray_NewCopy = 85, |
| API_PyArray_NewFromDescr = 94, |
| API_PyArray_DescrNewFromType = 9, |
| API_PyArray_DescrConverter = 174, |
| API_PyArray_EquivTypes = 182, |
| API_PyArray_GetArrayParamsFromObject = 278, |
| API_PyArray_Squeeze = 136 |
| }; |
| |
| static npy_api lookup() { |
| module m = module::import("numpy.core.multiarray"); |
| auto c = m.attr("_ARRAY_API"); |
| #if PY_MAJOR_VERSION >= 3 |
| void **api_ptr = (void **) PyCapsule_GetPointer(c.ptr(), NULL); |
| #else |
| void **api_ptr = (void **) PyCObject_AsVoidPtr(c.ptr()); |
| #endif |
| npy_api api; |
| #define DECL_NPY_API(Func) api.Func##_ = (decltype(api.Func##_)) api_ptr[API_##Func]; |
| DECL_NPY_API(PyArray_Type); |
| DECL_NPY_API(PyVoidArrType_Type); |
| DECL_NPY_API(PyArrayDescr_Type); |
| DECL_NPY_API(PyArray_DescrFromType); |
| DECL_NPY_API(PyArray_DescrFromScalar); |
| DECL_NPY_API(PyArray_FromAny); |
| DECL_NPY_API(PyArray_NewCopy); |
| DECL_NPY_API(PyArray_NewFromDescr); |
| DECL_NPY_API(PyArray_DescrNewFromType); |
| DECL_NPY_API(PyArray_DescrConverter); |
| DECL_NPY_API(PyArray_EquivTypes); |
| DECL_NPY_API(PyArray_GetArrayParamsFromObject); |
| DECL_NPY_API(PyArray_Squeeze); |
| #undef DECL_NPY_API |
| return api; |
| } |
| }; |
| NAMESPACE_END(detail) |
| |
| #define PyArray_GET_(ptr, attr) \ |
| (reinterpret_cast<::pybind11::detail::PyArray_Proxy*>(ptr)->attr) |
| #define PyArrayDescr_GET_(ptr, attr) \ |
| (reinterpret_cast<::pybind11::detail::PyArrayDescr_Proxy*>(ptr)->attr) |
| #define PyArray_FLAGS_(ptr) \ |
| PyArray_GET_(ptr, flags) |
| #define PyArray_CHKFLAGS_(ptr, flag) \ |
| (flag == (PyArray_FLAGS_(ptr) & flag)) |
| |
| class dtype : public object { |
| public: |
| PYBIND11_OBJECT_DEFAULT(dtype, object, detail::npy_api::get().PyArrayDescr_Check_); |
| |
| explicit dtype(const buffer_info &info) { |
| dtype descr(_dtype_from_pep3118()(PYBIND11_STR_TYPE(info.format))); |
| m_ptr = descr.strip_padding().release().ptr(); |
| } |
| |
| explicit dtype(const std::string &format) { |
| m_ptr = from_args(pybind11::str(format)).release().ptr(); |
| } |
| |
| dtype(const char *format) : dtype(std::string(format)) { } |
| |
| dtype(list names, list formats, list offsets, size_t itemsize) { |
| dict args; |
| args["names"] = names; |
| args["formats"] = formats; |
| args["offsets"] = offsets; |
| args["itemsize"] = pybind11::int_(itemsize); |
| m_ptr = from_args(args).release().ptr(); |
| } |
| |
| /// This is essentially the same as calling numpy.dtype(args) in Python. |
| static dtype from_args(object args) { |
| PyObject *ptr = nullptr; |
| if (!detail::npy_api::get().PyArray_DescrConverter_(args.release().ptr(), &ptr) || !ptr) |
| throw error_already_set(); |
| return object(ptr, false); |
| } |
| |
| /// Return dtype associated with a C++ type. |
| template <typename T> static dtype of() { |
| return detail::npy_format_descriptor<typename std::remove_cv<T>::type>::dtype(); |
| } |
| |
| /// Size of the data type in bytes. |
| size_t itemsize() const { |
| return (size_t) PyArrayDescr_GET_(m_ptr, elsize); |
| } |
| |
| /// Returns true for structured data types. |
| bool has_fields() const { |
| return PyArrayDescr_GET_(m_ptr, names) != nullptr; |
| } |
| |
| /// Single-character type code. |
| char kind() const { |
| return PyArrayDescr_GET_(m_ptr, kind); |
| } |
| |
| private: |
| static object _dtype_from_pep3118() { |
| static PyObject *obj = module::import("numpy.core._internal") |
| .attr("_dtype_from_pep3118").cast<object>().release().ptr(); |
| return object(obj, true); |
| } |
| |
| dtype strip_padding() { |
| // Recursively strip all void fields with empty names that are generated for |
| // padding fields (as of NumPy v1.11). |
| if (!has_fields()) |
| return *this; |
| |
| struct field_descr { PYBIND11_STR_TYPE name; object format; pybind11::int_ offset; }; |
| std::vector<field_descr> field_descriptors; |
| |
| for (auto field : attr("fields").attr("items")()) { |
| auto spec = object(field, true).cast<tuple>(); |
| auto name = spec[0].cast<pybind11::str>(); |
| auto format = spec[1].cast<tuple>()[0].cast<dtype>(); |
| auto offset = spec[1].cast<tuple>()[1].cast<pybind11::int_>(); |
| if (!len(name) && format.kind() == 'V') |
| continue; |
| field_descriptors.push_back({(PYBIND11_STR_TYPE) name, format.strip_padding(), offset}); |
| } |
| |
| std::sort(field_descriptors.begin(), field_descriptors.end(), |
| [](const field_descr& a, const field_descr& b) { |
| return a.offset.cast<int>() < b.offset.cast<int>(); |
| }); |
| |
| list names, formats, offsets; |
| for (auto& descr : field_descriptors) { |
| names.append(descr.name); |
| formats.append(descr.format); |
| offsets.append(descr.offset); |
| } |
| return dtype(names, formats, offsets, itemsize()); |
| } |
| }; |
| |
| class array : public buffer { |
| public: |
| PYBIND11_OBJECT_DEFAULT(array, buffer, detail::npy_api::get().PyArray_Check_) |
| |
| enum { |
| c_style = detail::npy_api::NPY_C_CONTIGUOUS_, |
| f_style = detail::npy_api::NPY_F_CONTIGUOUS_, |
| forcecast = detail::npy_api::NPY_ARRAY_FORCECAST_ |
| }; |
| |
| array(const pybind11::dtype &dt, const std::vector<size_t> &shape, |
| const std::vector<size_t> &strides, const void *ptr = nullptr, |
| handle base = handle()) { |
| auto& api = detail::npy_api::get(); |
| auto ndim = shape.size(); |
| if (shape.size() != strides.size()) |
| pybind11_fail("NumPy: shape ndim doesn't match strides ndim"); |
| auto descr = dt; |
| |
| int flags = 0; |
| if (base && ptr) { |
| array base_array(base, true); |
| if (base_array.check()) |
| /* Copy flags from base (except baseship bit) */ |
| flags = base_array.flags() & ~detail::npy_api::NPY_ARRAY_OWNDATA_; |
| else |
| /* Writable by default, easy to downgrade later on if needed */ |
| flags = detail::npy_api::NPY_ARRAY_WRITEABLE_; |
| } |
| |
| object tmp(api.PyArray_NewFromDescr_( |
| api.PyArray_Type_, descr.release().ptr(), (int) ndim, (Py_intptr_t *) shape.data(), |
| (Py_intptr_t *) strides.data(), const_cast<void *>(ptr), flags, nullptr), false); |
| if (!tmp) |
| pybind11_fail("NumPy: unable to create array!"); |
| if (ptr) { |
| if (base) { |
| PyArray_GET_(tmp.ptr(), base) = base.inc_ref().ptr(); |
| } else { |
| tmp = object(api.PyArray_NewCopy_(tmp.ptr(), -1 /* any order */), false); |
| } |
| } |
| m_ptr = tmp.release().ptr(); |
| } |
| |
| array(const pybind11::dtype &dt, const std::vector<size_t> &shape, |
| const void *ptr = nullptr, handle base = handle()) |
| : array(dt, shape, default_strides(shape, dt.itemsize()), ptr, base) { } |
| |
| array(const pybind11::dtype &dt, size_t count, const void *ptr = nullptr, |
| handle base = handle()) |
| : array(dt, std::vector<size_t>{ count }, ptr, base) { } |
| |
| template<typename T> array(const std::vector<size_t>& shape, |
| const std::vector<size_t>& strides, |
| const T* ptr, handle base = handle()) |
| : array(pybind11::dtype::of<T>(), shape, strides, (void *) ptr, base) { } |
| |
| template <typename T> |
| array(const std::vector<size_t> &shape, const T *ptr, |
| handle base = handle()) |
| : array(shape, default_strides(shape, sizeof(T)), ptr, base) { } |
| |
| template <typename T> |
| array(size_t count, const T *ptr, handle base = handle()) |
| : array(std::vector<size_t>{ count }, ptr, base) { } |
| |
| explicit array(const buffer_info &info) |
| : array(pybind11::dtype(info), info.shape, info.strides, info.ptr) { } |
| |
| /// Array descriptor (dtype) |
| pybind11::dtype dtype() const { |
| return object(PyArray_GET_(m_ptr, descr), true); |
| } |
| |
| /// Total number of elements |
| size_t size() const { |
| return std::accumulate(shape(), shape() + ndim(), (size_t) 1, std::multiplies<size_t>()); |
| } |
| |
| /// Byte size of a single element |
| size_t itemsize() const { |
| return (size_t) PyArrayDescr_GET_(PyArray_GET_(m_ptr, descr), elsize); |
| } |
| |
| /// Total number of bytes |
| size_t nbytes() const { |
| return size() * itemsize(); |
| } |
| |
| /// Number of dimensions |
| size_t ndim() const { |
| return (size_t) PyArray_GET_(m_ptr, nd); |
| } |
| |
| /// Base object |
| object base() const { |
| return object(PyArray_GET_(m_ptr, base), true); |
| } |
| |
| /// Dimensions of the array |
| const size_t* shape() const { |
| return reinterpret_cast<const size_t *>(PyArray_GET_(m_ptr, dimensions)); |
| } |
| |
| /// Dimension along a given axis |
| size_t shape(size_t dim) const { |
| if (dim >= ndim()) |
| fail_dim_check(dim, "invalid axis"); |
| return shape()[dim]; |
| } |
| |
| /// Strides of the array |
| const size_t* strides() const { |
| return reinterpret_cast<const size_t *>(PyArray_GET_(m_ptr, strides)); |
| } |
| |
| /// Stride along a given axis |
| size_t strides(size_t dim) const { |
| if (dim >= ndim()) |
| fail_dim_check(dim, "invalid axis"); |
| return strides()[dim]; |
| } |
| |
| /// Return the NumPy array flags |
| int flags() const { |
| return PyArray_FLAGS_(m_ptr); |
| } |
| |
| /// If set, the array is writeable (otherwise the buffer is read-only) |
| bool writeable() const { |
| return PyArray_CHKFLAGS_(m_ptr, detail::npy_api::NPY_ARRAY_WRITEABLE_); |
| } |
| |
| /// If set, the array owns the data (will be freed when the array is deleted) |
| bool owndata() const { |
| return PyArray_CHKFLAGS_(m_ptr, detail::npy_api::NPY_ARRAY_OWNDATA_); |
| } |
| |
| /// Pointer to the contained data. If index is not provided, points to the |
| /// beginning of the buffer. May throw if the index would lead to out of bounds access. |
| template<typename... Ix> const void* data(Ix&&... index) const { |
| return static_cast<const void *>(PyArray_GET_(m_ptr, data) + offset_at(index...)); |
| } |
| |
| /// Mutable pointer to the contained data. If index is not provided, points to the |
| /// beginning of the buffer. May throw if the index would lead to out of bounds access. |
| /// May throw if the array is not writeable. |
| template<typename... Ix> void* mutable_data(Ix&&... index) { |
| check_writeable(); |
| return static_cast<void *>(PyArray_GET_(m_ptr, data) + offset_at(index...)); |
| } |
| |
| /// Byte offset from beginning of the array to a given index (full or partial). |
| /// May throw if the index would lead to out of bounds access. |
| template<typename... Ix> size_t offset_at(Ix&&... index) const { |
| if (sizeof...(index) > ndim()) |
| fail_dim_check(sizeof...(index), "too many indices for an array"); |
| return get_byte_offset(index...); |
| } |
| |
| size_t offset_at() const { return 0; } |
| |
| /// Item count from beginning of the array to a given index (full or partial). |
| /// May throw if the index would lead to out of bounds access. |
| template<typename... Ix> size_t index_at(Ix&&... index) const { |
| return offset_at(index...) / itemsize(); |
| } |
| |
| /// Return a new view with all of the dimensions of length 1 removed |
| array squeeze() { |
| auto& api = detail::npy_api::get(); |
| return array(api.PyArray_Squeeze_(m_ptr), false); |
| } |
| |
| /// Ensure that the argument is a NumPy array |
| static array ensure(object input, int ExtraFlags = 0) { |
| auto& api = detail::npy_api::get(); |
| return array(api.PyArray_FromAny_( |
| input.release().ptr(), nullptr, 0, 0, detail::npy_api::NPY_ENSURE_ARRAY_ | ExtraFlags, nullptr), false); |
| } |
| |
| protected: |
| template<typename, typename> friend struct detail::npy_format_descriptor; |
| |
| void fail_dim_check(size_t dim, const std::string& msg) const { |
| throw index_error(msg + ": " + std::to_string(dim) + |
| " (ndim = " + std::to_string(ndim()) + ")"); |
| } |
| |
| template<typename... Ix> size_t get_byte_offset(Ix&&... index) const { |
| const size_t idx[] = { (size_t) index... }; |
| if (!std::equal(idx + 0, idx + sizeof...(index), shape(), std::less<size_t>{})) { |
| auto mismatch = std::mismatch(idx + 0, idx + sizeof...(index), shape(), std::less<size_t>{}); |
| throw index_error(std::string("index ") + std::to_string(*mismatch.first) + |
| " is out of bounds for axis " + std::to_string(mismatch.first - idx) + |
| " with size " + std::to_string(*mismatch.second)); |
| } |
| return std::inner_product(idx + 0, idx + sizeof...(index), strides(), (size_t) 0); |
| } |
| |
| size_t get_byte_offset() const { return 0; } |
| |
| void check_writeable() const { |
| if (!writeable()) |
| throw std::runtime_error("array is not writeable"); |
| } |
| |
| static std::vector<size_t> default_strides(const std::vector<size_t>& shape, size_t itemsize) { |
| auto ndim = shape.size(); |
| std::vector<size_t> strides(ndim); |
| if (ndim) { |
| std::fill(strides.begin(), strides.end(), itemsize); |
| for (size_t i = 0; i < ndim - 1; i++) |
| for (size_t j = 0; j < ndim - 1 - i; j++) |
| strides[j] *= shape[ndim - 1 - i]; |
| } |
| return strides; |
| } |
| }; |
| |
| template <typename T, int ExtraFlags = array::forcecast> class array_t : public array { |
| public: |
| PYBIND11_OBJECT_CVT(array_t, array, is_non_null, m_ptr = ensure_(m_ptr)); |
| |
| array_t() : array() { } |
| |
| explicit array_t(const buffer_info& info) : array(info) { } |
| |
| array_t(const std::vector<size_t> &shape, |
| const std::vector<size_t> &strides, const T *ptr = nullptr, |
| handle base = handle()) |
| : array(shape, strides, ptr, base) { } |
| |
| explicit array_t(const std::vector<size_t> &shape, const T *ptr = nullptr, |
| handle base = handle()) |
| : array(shape, ptr, base) { } |
| |
| explicit array_t(size_t count, const T *ptr = nullptr, handle base = handle()) |
| : array(count, ptr, base) { } |
| |
| constexpr size_t itemsize() const { |
| return sizeof(T); |
| } |
| |
| template<typename... Ix> size_t index_at(Ix&... index) const { |
| return offset_at(index...) / itemsize(); |
| } |
| |
| template<typename... Ix> const T* data(Ix&&... index) const { |
| return static_cast<const T*>(array::data(index...)); |
| } |
| |
| template<typename... Ix> T* mutable_data(Ix&&... index) { |
| return static_cast<T*>(array::mutable_data(index...)); |
| } |
| |
| // Reference to element at a given index |
| template<typename... Ix> const T& at(Ix&&... index) const { |
| if (sizeof...(index) != ndim()) |
| fail_dim_check(sizeof...(index), "index dimension mismatch"); |
| // not using offset_at() / index_at() here so as to avoid another dimension check |
| return *(static_cast<const T*>(array::data()) + get_byte_offset(index...) / itemsize()); |
| } |
| |
| // Mutable reference to element at a given index |
| template<typename... Ix> T& mutable_at(Ix&&... index) { |
| if (sizeof...(index) != ndim()) |
| fail_dim_check(sizeof...(index), "index dimension mismatch"); |
| // not using offset_at() / index_at() here so as to avoid another dimension check |
| return *(static_cast<T*>(array::mutable_data()) + get_byte_offset(index...) / itemsize()); |
| } |
| |
| static bool is_non_null(PyObject *ptr) { return ptr != nullptr; } |
| |
| static PyObject *ensure_(PyObject *ptr) { |
| if (ptr == nullptr) |
| return nullptr; |
| auto& api = detail::npy_api::get(); |
| PyObject *result = api.PyArray_FromAny_(ptr, pybind11::dtype::of<T>().release().ptr(), 0, 0, |
| detail::npy_api::NPY_ENSURE_ARRAY_ | ExtraFlags, nullptr); |
| if (!result) |
| PyErr_Clear(); |
| Py_DECREF(ptr); |
| return result; |
| } |
| }; |
| |
| template <typename T> |
| struct format_descriptor<T, detail::enable_if_t<detail::is_pod_struct<T>::value>> { |
| static std::string format() { |
| return detail::npy_format_descriptor<typename std::remove_cv<T>::type>::format(); |
| } |
| }; |
| |
| template <size_t N> struct format_descriptor<char[N]> { |
| static std::string format() { return std::to_string(N) + "s"; } |
| }; |
| template <size_t N> struct format_descriptor<std::array<char, N>> { |
| static std::string format() { return std::to_string(N) + "s"; } |
| }; |
| |
| template <typename T> |
| struct format_descriptor<T, detail::enable_if_t<std::is_enum<T>::value>> { |
| static std::string format() { |
| return format_descriptor< |
| typename std::remove_cv<typename std::underlying_type<T>::type>::type>::format(); |
| } |
| }; |
| |
| NAMESPACE_BEGIN(detail) |
| template <typename T> struct is_std_array : std::false_type { }; |
| template <typename T, size_t N> struct is_std_array<std::array<T, N>> : std::true_type { }; |
| |
| template <typename T> |
| struct is_pod_struct { |
| enum { value = std::is_pod<T>::value && // offsetof only works correctly for POD types |
| !std::is_reference<T>::value && |
| !std::is_array<T>::value && |
| !is_std_array<T>::value && |
| !std::is_integral<T>::value && |
| !std::is_enum<T>::value && |
| !std::is_same<typename std::remove_cv<T>::type, float>::value && |
| !std::is_same<typename std::remove_cv<T>::type, double>::value && |
| !std::is_same<typename std::remove_cv<T>::type, bool>::value && |
| !std::is_same<typename std::remove_cv<T>::type, std::complex<float>>::value && |
| !std::is_same<typename std::remove_cv<T>::type, std::complex<double>>::value }; |
| }; |
| |
| template <typename T> struct npy_format_descriptor<T, enable_if_t<std::is_integral<T>::value>> { |
| private: |
| constexpr static const int values[8] = { |
| npy_api::NPY_BYTE_, npy_api::NPY_UBYTE_, npy_api::NPY_SHORT_, npy_api::NPY_USHORT_, |
| npy_api::NPY_INT_, npy_api::NPY_UINT_, npy_api::NPY_LONGLONG_, npy_api::NPY_ULONGLONG_ }; |
| public: |
| enum { value = values[detail::log2(sizeof(T)) * 2 + (std::is_unsigned<T>::value ? 1 : 0)] }; |
| static pybind11::dtype dtype() { |
| if (auto ptr = npy_api::get().PyArray_DescrFromType_(value)) |
| return object(ptr, true); |
| pybind11_fail("Unsupported buffer format!"); |
| } |
| template <typename T2 = T, enable_if_t<std::is_signed<T2>::value, int> = 0> |
| static PYBIND11_DESCR name() { return _("int") + _<sizeof(T)*8>(); } |
| template <typename T2 = T, enable_if_t<!std::is_signed<T2>::value, int> = 0> |
| static PYBIND11_DESCR name() { return _("uint") + _<sizeof(T)*8>(); } |
| }; |
| template <typename T> constexpr const int npy_format_descriptor< |
| T, enable_if_t<std::is_integral<T>::value>>::values[8]; |
| |
| #define DECL_FMT(Type, NumPyName, Name) template<> struct npy_format_descriptor<Type> { \ |
| enum { value = npy_api::NumPyName }; \ |
| static pybind11::dtype dtype() { \ |
| if (auto ptr = npy_api::get().PyArray_DescrFromType_(value)) \ |
| return object(ptr, true); \ |
| pybind11_fail("Unsupported buffer format!"); \ |
| } \ |
| static PYBIND11_DESCR name() { return _(Name); } } |
| DECL_FMT(float, NPY_FLOAT_, "float32"); |
| DECL_FMT(double, NPY_DOUBLE_, "float64"); |
| DECL_FMT(bool, NPY_BOOL_, "bool"); |
| DECL_FMT(std::complex<float>, NPY_CFLOAT_, "complex64"); |
| DECL_FMT(std::complex<double>, NPY_CDOUBLE_, "complex128"); |
| #undef DECL_FMT |
| |
| #define DECL_CHAR_FMT \ |
| static PYBIND11_DESCR name() { return _("S") + _<N>(); } \ |
| static pybind11::dtype dtype() { return pybind11::dtype(std::string("S") + std::to_string(N)); } |
| template <size_t N> struct npy_format_descriptor<char[N]> { DECL_CHAR_FMT }; |
| template <size_t N> struct npy_format_descriptor<std::array<char, N>> { DECL_CHAR_FMT }; |
| #undef DECL_CHAR_FMT |
| |
| template<typename T> struct npy_format_descriptor<T, enable_if_t<std::is_enum<T>::value>> { |
| private: |
| using base_descr = npy_format_descriptor<typename std::underlying_type<T>::type>; |
| public: |
| static PYBIND11_DESCR name() { return base_descr::name(); } |
| static pybind11::dtype dtype() { return base_descr::dtype(); } |
| }; |
| |
| struct field_descriptor { |
| const char *name; |
| size_t offset; |
| size_t size; |
| std::string format; |
| dtype descr; |
| }; |
| |
| inline PYBIND11_NOINLINE void register_structured_dtype( |
| const std::initializer_list<field_descriptor>& fields, |
| const std::type_info& tinfo, size_t itemsize, |
| bool (*direct_converter)(PyObject *, void *&)) |
| { |
| auto& numpy_internals = get_numpy_internals(); |
| if (numpy_internals.get_type_info(tinfo, false)) |
| pybind11_fail("NumPy: dtype is already registered"); |
| |
| list names, formats, offsets; |
| for (auto field : fields) { |
| if (!field.descr) |
| pybind11_fail(std::string("NumPy: unsupported field dtype: `") + |
| field.name + "` @ " + tinfo.name()); |
| names.append(PYBIND11_STR_TYPE(field.name)); |
| formats.append(field.descr); |
| offsets.append(pybind11::int_(field.offset)); |
| } |
| auto dtype_ptr = pybind11::dtype(names, formats, offsets, itemsize).release().ptr(); |
| |
| // There is an existing bug in NumPy (as of v1.11): trailing bytes are |
| // not encoded explicitly into the format string. This will supposedly |
| // get fixed in v1.12; for further details, see these: |
| // - https://github.com/numpy/numpy/issues/7797 |
| // - https://github.com/numpy/numpy/pull/7798 |
| // Because of this, we won't use numpy's logic to generate buffer format |
| // strings and will just do it ourselves. |
| std::vector<field_descriptor> ordered_fields(fields); |
| std::sort(ordered_fields.begin(), ordered_fields.end(), |
| [](const field_descriptor &a, const field_descriptor &b) { return a.offset < b.offset; }); |
| size_t offset = 0; |
| std::ostringstream oss; |
| oss << "T{"; |
| for (auto& field : ordered_fields) { |
| if (field.offset > offset) |
| oss << (field.offset - offset) << 'x'; |
| // note that '=' is required to cover the case of unaligned fields |
| oss << '=' << field.format << ':' << field.name << ':'; |
| offset = field.offset + field.size; |
| } |
| if (itemsize > offset) |
| oss << (itemsize - offset) << 'x'; |
| oss << '}'; |
| auto format_str = oss.str(); |
| |
| // Sanity check: verify that NumPy properly parses our buffer format string |
| auto& api = npy_api::get(); |
| auto arr = array(buffer_info(nullptr, itemsize, format_str, 1)); |
| if (!api.PyArray_EquivTypes_(dtype_ptr, arr.dtype().ptr())) |
| pybind11_fail("NumPy: invalid buffer descriptor!"); |
| |
| auto tindex = std::type_index(tinfo); |
| numpy_internals.registered_dtypes[tindex] = { dtype_ptr, format_str }; |
| get_internals().direct_conversions[tindex].push_back(direct_converter); |
| } |
| |
| template <typename T> |
| struct npy_format_descriptor<T, enable_if_t<is_pod_struct<T>::value>> { |
| static PYBIND11_DESCR name() { return _("struct"); } |
| |
| static pybind11::dtype dtype() { |
| return object(dtype_ptr(), true); |
| } |
| |
| static std::string format() { |
| static auto format_str = get_numpy_internals().get_type_info<T>(true)->format_str; |
| return format_str; |
| } |
| |
| static void register_dtype(const std::initializer_list<field_descriptor>& fields) { |
| register_structured_dtype(fields, typeid(typename std::remove_cv<T>::type), |
| sizeof(T), &direct_converter); |
| } |
| |
| private: |
| static PyObject* dtype_ptr() { |
| static PyObject* ptr = get_numpy_internals().get_type_info<T>(true)->dtype_ptr; |
| return ptr; |
| } |
| |
| static bool direct_converter(PyObject *obj, void*& value) { |
| auto& api = npy_api::get(); |
| if (!PyObject_TypeCheck(obj, api.PyVoidArrType_Type_)) |
| return false; |
| if (auto descr = object(api.PyArray_DescrFromScalar_(obj), false)) { |
| if (api.PyArray_EquivTypes_(dtype_ptr(), descr.ptr())) { |
| value = ((PyVoidScalarObject_Proxy *) obj)->obval; |
| return true; |
| } |
| } |
| return false; |
| } |
| }; |
| |
| #define PYBIND11_FIELD_DESCRIPTOR_EX(T, Field, Name) \ |
| ::pybind11::detail::field_descriptor { \ |
| Name, offsetof(T, Field), sizeof(decltype(std::declval<T>().Field)), \ |
| ::pybind11::format_descriptor<decltype(std::declval<T>().Field)>::format(), \ |
| ::pybind11::detail::npy_format_descriptor<decltype(std::declval<T>().Field)>::dtype() \ |
| } |
| |
| // Extract name, offset and format descriptor for a struct field |
| #define PYBIND11_FIELD_DESCRIPTOR(T, Field) PYBIND11_FIELD_DESCRIPTOR_EX(T, Field, #Field) |
| |
| // The main idea of this macro is borrowed from https://github.com/swansontec/map-macro |
| // (C) William Swanson, Paul Fultz |
| #define PYBIND11_EVAL0(...) __VA_ARGS__ |
| #define PYBIND11_EVAL1(...) PYBIND11_EVAL0 (PYBIND11_EVAL0 (PYBIND11_EVAL0 (__VA_ARGS__))) |
| #define PYBIND11_EVAL2(...) PYBIND11_EVAL1 (PYBIND11_EVAL1 (PYBIND11_EVAL1 (__VA_ARGS__))) |
| #define PYBIND11_EVAL3(...) PYBIND11_EVAL2 (PYBIND11_EVAL2 (PYBIND11_EVAL2 (__VA_ARGS__))) |
| #define PYBIND11_EVAL4(...) PYBIND11_EVAL3 (PYBIND11_EVAL3 (PYBIND11_EVAL3 (__VA_ARGS__))) |
| #define PYBIND11_EVAL(...) PYBIND11_EVAL4 (PYBIND11_EVAL4 (PYBIND11_EVAL4 (__VA_ARGS__))) |
| #define PYBIND11_MAP_END(...) |
| #define PYBIND11_MAP_OUT |
| #define PYBIND11_MAP_COMMA , |
| #define PYBIND11_MAP_GET_END() 0, PYBIND11_MAP_END |
| #define PYBIND11_MAP_NEXT0(test, next, ...) next PYBIND11_MAP_OUT |
| #define PYBIND11_MAP_NEXT1(test, next) PYBIND11_MAP_NEXT0 (test, next, 0) |
| #define PYBIND11_MAP_NEXT(test, next) PYBIND11_MAP_NEXT1 (PYBIND11_MAP_GET_END test, next) |
| #ifdef _MSC_VER // MSVC is not as eager to expand macros, hence this workaround |
| #define PYBIND11_MAP_LIST_NEXT1(test, next) \ |
| PYBIND11_EVAL0 (PYBIND11_MAP_NEXT0 (test, PYBIND11_MAP_COMMA next, 0)) |
| #else |
| #define PYBIND11_MAP_LIST_NEXT1(test, next) \ |
| PYBIND11_MAP_NEXT0 (test, PYBIND11_MAP_COMMA next, 0) |
| #endif |
| #define PYBIND11_MAP_LIST_NEXT(test, next) \ |
| PYBIND11_MAP_LIST_NEXT1 (PYBIND11_MAP_GET_END test, next) |
| #define PYBIND11_MAP_LIST0(f, t, x, peek, ...) \ |
| f(t, x) PYBIND11_MAP_LIST_NEXT (peek, PYBIND11_MAP_LIST1) (f, t, peek, __VA_ARGS__) |
| #define PYBIND11_MAP_LIST1(f, t, x, peek, ...) \ |
| f(t, x) PYBIND11_MAP_LIST_NEXT (peek, PYBIND11_MAP_LIST0) (f, t, peek, __VA_ARGS__) |
| // PYBIND11_MAP_LIST(f, t, a1, a2, ...) expands to f(t, a1), f(t, a2), ... |
| #define PYBIND11_MAP_LIST(f, t, ...) \ |
| PYBIND11_EVAL (PYBIND11_MAP_LIST1 (f, t, __VA_ARGS__, (), 0)) |
| |
| #define PYBIND11_NUMPY_DTYPE(Type, ...) \ |
| ::pybind11::detail::npy_format_descriptor<Type>::register_dtype \ |
| ({PYBIND11_MAP_LIST (PYBIND11_FIELD_DESCRIPTOR, Type, __VA_ARGS__)}) |
| |
| #ifdef _MSC_VER |
| #define PYBIND11_MAP2_LIST_NEXT1(test, next) \ |
| PYBIND11_EVAL0 (PYBIND11_MAP_NEXT0 (test, PYBIND11_MAP_COMMA next, 0)) |
| #else |
| #define PYBIND11_MAP2_LIST_NEXT1(test, next) \ |
| PYBIND11_MAP_NEXT0 (test, PYBIND11_MAP_COMMA next, 0) |
| #endif |
| #define PYBIND11_MAP2_LIST_NEXT(test, next) \ |
| PYBIND11_MAP2_LIST_NEXT1 (PYBIND11_MAP_GET_END test, next) |
| #define PYBIND11_MAP2_LIST0(f, t, x1, x2, peek, ...) \ |
| f(t, x1, x2) PYBIND11_MAP2_LIST_NEXT (peek, PYBIND11_MAP2_LIST1) (f, t, peek, __VA_ARGS__) |
| #define PYBIND11_MAP2_LIST1(f, t, x1, x2, peek, ...) \ |
| f(t, x1, x2) PYBIND11_MAP2_LIST_NEXT (peek, PYBIND11_MAP2_LIST0) (f, t, peek, __VA_ARGS__) |
| // PYBIND11_MAP2_LIST(f, t, a1, a2, ...) expands to f(t, a1, a2), f(t, a3, a4), ... |
| #define PYBIND11_MAP2_LIST(f, t, ...) \ |
| PYBIND11_EVAL (PYBIND11_MAP2_LIST1 (f, t, __VA_ARGS__, (), 0)) |
| |
| #define PYBIND11_NUMPY_DTYPE_EX(Type, ...) \ |
| ::pybind11::detail::npy_format_descriptor<Type>::register_dtype \ |
| ({PYBIND11_MAP2_LIST (PYBIND11_FIELD_DESCRIPTOR_EX, Type, __VA_ARGS__)}) |
| |
| template <class T> |
| using array_iterator = typename std::add_pointer<T>::type; |
| |
| template <class T> |
| array_iterator<T> array_begin(const buffer_info& buffer) { |
| return array_iterator<T>(reinterpret_cast<T*>(buffer.ptr)); |
| } |
| |
| template <class T> |
| array_iterator<T> array_end(const buffer_info& buffer) { |
| return array_iterator<T>(reinterpret_cast<T*>(buffer.ptr) + buffer.size); |
| } |
| |
| class common_iterator { |
| public: |
| using container_type = std::vector<size_t>; |
| using value_type = container_type::value_type; |
| using size_type = container_type::size_type; |
| |
| common_iterator() : p_ptr(0), m_strides() {} |
| |
| common_iterator(void* ptr, const container_type& strides, const std::vector<size_t>& shape) |
| : p_ptr(reinterpret_cast<char*>(ptr)), m_strides(strides.size()) { |
| m_strides.back() = static_cast<value_type>(strides.back()); |
| for (size_type i = m_strides.size() - 1; i != 0; --i) { |
| size_type j = i - 1; |
| value_type s = static_cast<value_type>(shape[i]); |
| m_strides[j] = strides[j] + m_strides[i] - strides[i] * s; |
| } |
| } |
| |
| void increment(size_type dim) { |
| p_ptr += m_strides[dim]; |
| } |
| |
| void* data() const { |
| return p_ptr; |
| } |
| |
| private: |
| char* p_ptr; |
| container_type m_strides; |
| }; |
| |
| template <size_t N> class multi_array_iterator { |
| public: |
| using container_type = std::vector<size_t>; |
| |
| multi_array_iterator(const std::array<buffer_info, N> &buffers, |
| const std::vector<size_t> &shape) |
| : m_shape(shape.size()), m_index(shape.size(), 0), |
| m_common_iterator() { |
| |
| // Manual copy to avoid conversion warning if using std::copy |
| for (size_t i = 0; i < shape.size(); ++i) |
| m_shape[i] = static_cast<container_type::value_type>(shape[i]); |
| |
| container_type strides(shape.size()); |
| for (size_t i = 0; i < N; ++i) |
| init_common_iterator(buffers[i], shape, m_common_iterator[i], strides); |
| } |
| |
| multi_array_iterator& operator++() { |
| for (size_t j = m_index.size(); j != 0; --j) { |
| size_t i = j - 1; |
| if (++m_index[i] != m_shape[i]) { |
| increment_common_iterator(i); |
| break; |
| } else { |
| m_index[i] = 0; |
| } |
| } |
| return *this; |
| } |
| |
| template <size_t K, class T> const T& data() const { |
| return *reinterpret_cast<T*>(m_common_iterator[K].data()); |
| } |
| |
| private: |
| |
| using common_iter = common_iterator; |
| |
| void init_common_iterator(const buffer_info &buffer, |
| const std::vector<size_t> &shape, |
| common_iter &iterator, container_type &strides) { |
| auto buffer_shape_iter = buffer.shape.rbegin(); |
| auto buffer_strides_iter = buffer.strides.rbegin(); |
| auto shape_iter = shape.rbegin(); |
| auto strides_iter = strides.rbegin(); |
| |
| while (buffer_shape_iter != buffer.shape.rend()) { |
| if (*shape_iter == *buffer_shape_iter) |
| *strides_iter = static_cast<size_t>(*buffer_strides_iter); |
| else |
| *strides_iter = 0; |
| |
| ++buffer_shape_iter; |
| ++buffer_strides_iter; |
| ++shape_iter; |
| ++strides_iter; |
| } |
| |
| std::fill(strides_iter, strides.rend(), 0); |
| iterator = common_iter(buffer.ptr, strides, shape); |
| } |
| |
| void increment_common_iterator(size_t dim) { |
| for (auto &iter : m_common_iterator) |
| iter.increment(dim); |
| } |
| |
| container_type m_shape; |
| container_type m_index; |
| std::array<common_iter, N> m_common_iterator; |
| }; |
| |
| template <size_t N> |
| bool broadcast(const std::array<buffer_info, N>& buffers, size_t& ndim, std::vector<size_t>& shape) { |
| ndim = std::accumulate(buffers.begin(), buffers.end(), size_t(0), [](size_t res, const buffer_info& buf) { |
| return std::max(res, buf.ndim); |
| }); |
| |
| shape = std::vector<size_t>(ndim, 1); |
| bool trivial_broadcast = true; |
| for (size_t i = 0; i < N; ++i) { |
| auto res_iter = shape.rbegin(); |
| bool i_trivial_broadcast = (buffers[i].size == 1) || (buffers[i].ndim == ndim); |
| for (auto shape_iter = buffers[i].shape.rbegin(); |
| shape_iter != buffers[i].shape.rend(); ++shape_iter, ++res_iter) { |
| |
| if (*res_iter == 1) |
| *res_iter = *shape_iter; |
| else if ((*shape_iter != 1) && (*res_iter != *shape_iter)) |
| pybind11_fail("pybind11::vectorize: incompatible size/dimension of inputs!"); |
| |
| i_trivial_broadcast = i_trivial_broadcast && (*res_iter == *shape_iter); |
| } |
| trivial_broadcast = trivial_broadcast && i_trivial_broadcast; |
| } |
| return trivial_broadcast; |
| } |
| |
| template <typename Func, typename Return, typename... Args> |
| struct vectorize_helper { |
| typename std::remove_reference<Func>::type f; |
| |
| template <typename T> |
| explicit vectorize_helper(T&&f) : f(std::forward<T>(f)) { } |
| |
| object operator()(array_t<Args, array::c_style | array::forcecast>... args) { |
| return run(args..., typename make_index_sequence<sizeof...(Args)>::type()); |
| } |
| |
| template <size_t ... Index> object run(array_t<Args, array::c_style | array::forcecast>&... args, index_sequence<Index...> index) { |
| /* Request buffers from all parameters */ |
| const size_t N = sizeof...(Args); |
| |
| std::array<buffer_info, N> buffers {{ args.request()... }}; |
| |
| /* Determine dimensions parameters of output array */ |
| size_t ndim = 0; |
| std::vector<size_t> shape(0); |
| bool trivial_broadcast = broadcast(buffers, ndim, shape); |
| |
| size_t size = 1; |
| std::vector<size_t> strides(ndim); |
| if (ndim > 0) { |
| strides[ndim-1] = sizeof(Return); |
| for (size_t i = ndim - 1; i > 0; --i) { |
| strides[i - 1] = strides[i] * shape[i]; |
| size *= shape[i]; |
| } |
| size *= shape[0]; |
| } |
| |
| if (size == 1) |
| return cast(f(*((Args *) buffers[Index].ptr)...)); |
| |
| array_t<Return> result(shape, strides); |
| auto buf = result.request(); |
| auto output = (Return *) buf.ptr; |
| |
| if (trivial_broadcast) { |
| /* Call the function */ |
| for (size_t i = 0; i < size; ++i) { |
| output[i] = f((buffers[Index].size == 1 |
| ? *((Args *) buffers[Index].ptr) |
| : ((Args *) buffers[Index].ptr)[i])...); |
| } |
| } else { |
| apply_broadcast<N, Index...>(buffers, buf, index); |
| } |
| |
| return result; |
| } |
| |
| template <size_t N, size_t... Index> |
| void apply_broadcast(const std::array<buffer_info, N> &buffers, |
| buffer_info &output, index_sequence<Index...>) { |
| using input_iterator = multi_array_iterator<N>; |
| using output_iterator = array_iterator<Return>; |
| |
| input_iterator input_iter(buffers, output.shape); |
| output_iterator output_end = array_end<Return>(output); |
| |
| for (output_iterator iter = array_begin<Return>(output); |
| iter != output_end; ++iter, ++input_iter) { |
| *iter = f((input_iter.template data<Index, Args>())...); |
| } |
| } |
| }; |
| |
| template <typename T, int Flags> struct handle_type_name<array_t<T, Flags>> { |
| static PYBIND11_DESCR name() { return _("numpy.ndarray[") + type_caster<T>::name() + _("]"); } |
| }; |
| |
| NAMESPACE_END(detail) |
| |
| template <typename Func, typename Return, typename... Args> |
| detail::vectorize_helper<Func, Return, Args...> vectorize(const Func &f, Return (*) (Args ...)) { |
| return detail::vectorize_helper<Func, Return, Args...>(f); |
| } |
| |
| template <typename Return, typename... Args> |
| detail::vectorize_helper<Return (*) (Args ...), Return, Args...> vectorize(Return (*f) (Args ...)) { |
| return vectorize<Return (*) (Args ...), Return, Args...>(f, f); |
| } |
| |
| template <typename Func> |
| auto vectorize(Func &&f) -> decltype( |
| vectorize(std::forward<Func>(f), (typename detail::remove_class<decltype(&std::remove_reference<Func>::type::operator())>::type *) nullptr)) { |
| return vectorize(std::forward<Func>(f), (typename detail::remove_class<decltype( |
| &std::remove_reference<Func>::type::operator())>::type *) nullptr); |
| } |
| |
| NAMESPACE_END(pybind11) |
| |
| #if defined(_MSC_VER) |
| #pragma warning(pop) |
| #endif |