Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 1 | /* |
| 2 | pybind/numpy.h: Basic NumPy support, auto-vectorization support |
| 3 | |
| 4 | Copyright (c) 2015 Wenzel Jakob <wenzel@inf.ethz.ch> |
| 5 | |
| 6 | All rights reserved. Use of this source code is governed by a |
| 7 | BSD-style license that can be found in the LICENSE file. |
| 8 | */ |
| 9 | |
| 10 | #pragma once |
| 11 | |
| 12 | #include <pybind/pybind.h> |
Wenzel Jakob | 281aa0e | 2015-07-30 15:29:00 +0200 | [diff] [blame^] | 13 | #include <pybind/complex.h> |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 14 | |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 15 | #if defined(_MSC_VER) |
| 16 | #pragma warning(push) |
| 17 | #pragma warning(disable: 4127) // warning C4127: Conditional expression is constant |
| 18 | #endif |
| 19 | |
| 20 | NAMESPACE_BEGIN(pybind) |
| 21 | |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 22 | template <typename type> struct npy_format_descriptor { }; |
| 23 | |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 24 | class array : public buffer { |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 25 | public: |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 26 | struct API { |
| 27 | enum Entries { |
| 28 | API_PyArray_Type = 2, |
| 29 | API_PyArray_DescrFromType = 45, |
| 30 | API_PyArray_FromAny = 69, |
| 31 | API_PyArray_NewCopy = 85, |
| 32 | API_PyArray_NewFromDescr = 94, |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 33 | NPY_C_CONTIGUOUS = 0x0001, |
| 34 | NPY_F_CONTIGUOUS = 0x0002, |
| 35 | NPY_NPY_ARRAY_FORCECAST = 0x0010, |
| 36 | NPY_ENSURE_ARRAY = 0x0040, |
| 37 | NPY_BOOL=0, |
| 38 | NPY_BYTE, NPY_UBYTE, |
| 39 | NPY_SHORT, NPY_USHORT, |
| 40 | NPY_INT, NPY_UINT, |
| 41 | NPY_LONG, NPY_ULONG, |
| 42 | NPY_LONGLONG, NPY_ULONGLONG, |
| 43 | NPY_FLOAT, NPY_DOUBLE, NPY_LONGDOUBLE, |
| 44 | NPY_CFLOAT, NPY_CDOUBLE, NPY_CLONGDOUBLE |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 45 | }; |
| 46 | |
| 47 | static API lookup() { |
| 48 | PyObject *numpy = PyImport_ImportModule("numpy.core.multiarray"); |
| 49 | PyObject *capsule = numpy ? PyObject_GetAttrString(numpy, "_ARRAY_API") : nullptr; |
| 50 | void **api_ptr = (void **) (capsule ? PyCapsule_GetPointer(capsule, NULL) : nullptr); |
| 51 | Py_XDECREF(capsule); |
| 52 | Py_XDECREF(numpy); |
| 53 | if (api_ptr == nullptr) |
| 54 | throw std::runtime_error("Could not acquire pointer to NumPy API!"); |
| 55 | API api; |
| 56 | api.PyArray_Type = (decltype(api.PyArray_Type)) api_ptr[API_PyArray_Type]; |
| 57 | api.PyArray_DescrFromType = (decltype(api.PyArray_DescrFromType)) api_ptr[API_PyArray_DescrFromType]; |
| 58 | api.PyArray_FromAny = (decltype(api.PyArray_FromAny)) api_ptr[API_PyArray_FromAny]; |
| 59 | api.PyArray_NewCopy = (decltype(api.PyArray_NewCopy)) api_ptr[API_PyArray_NewCopy]; |
| 60 | api.PyArray_NewFromDescr = (decltype(api.PyArray_NewFromDescr)) api_ptr[API_PyArray_NewFromDescr]; |
| 61 | return api; |
| 62 | } |
| 63 | |
| 64 | bool PyArray_Check(PyObject *obj) const { return (bool) PyObject_TypeCheck(obj, PyArray_Type); } |
| 65 | |
| 66 | PyObject *(*PyArray_DescrFromType)(int); |
| 67 | PyObject *(*PyArray_NewFromDescr) |
| 68 | (PyTypeObject *, PyObject *, int, Py_intptr_t *, |
| 69 | Py_intptr_t *, void *, int, PyObject *); |
| 70 | PyObject *(*PyArray_NewCopy)(PyObject *, int); |
| 71 | PyTypeObject *PyArray_Type; |
| 72 | PyObject *(*PyArray_FromAny) (PyObject *, PyObject *, int, int, int, PyObject *); |
| 73 | }; |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 74 | |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 75 | PYBIND_OBJECT_DEFAULT(array, buffer, lookup_api().PyArray_Check) |
| 76 | |
| 77 | template <typename Type> array(size_t size, const Type *ptr) { |
| 78 | API& api = lookup_api(); |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 79 | PyObject *descr = api.PyArray_DescrFromType(npy_format_descriptor<Type>::value); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 80 | if (descr == nullptr) |
| 81 | throw std::runtime_error("NumPy: unsupported buffer format!"); |
| 82 | Py_intptr_t shape = (Py_intptr_t) size; |
| 83 | PyObject *tmp = api.PyArray_NewFromDescr( |
| 84 | api.PyArray_Type, descr, 1, &shape, nullptr, (void *) ptr, 0, nullptr); |
| 85 | if (tmp == nullptr) |
| 86 | throw std::runtime_error("NumPy: unable to create array!"); |
| 87 | m_ptr = api.PyArray_NewCopy(tmp, -1 /* any order */); |
| 88 | Py_DECREF(tmp); |
| 89 | if (m_ptr == nullptr) |
| 90 | throw std::runtime_error("NumPy: unable to copy array!"); |
| 91 | } |
| 92 | |
| 93 | array(const buffer_info &info) { |
| 94 | API& api = lookup_api(); |
| 95 | if (info.format.size() != 1) |
| 96 | throw std::runtime_error("Unsupported buffer format!"); |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 97 | int fmt = (int) info.format[0]; |
| 98 | if (info.format == "Zd") |
| 99 | fmt = API::NPY_CDOUBLE; |
| 100 | else if (info.format == "Zf") |
| 101 | fmt = API::NPY_CFLOAT; |
| 102 | PyObject *descr = api.PyArray_DescrFromType(fmt); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 103 | if (descr == nullptr) |
| 104 | throw std::runtime_error("NumPy: unsupported buffer format '" + info.format + "'!"); |
| 105 | PyObject *tmp = api.PyArray_NewFromDescr( |
| 106 | api.PyArray_Type, descr, info.ndim, (Py_intptr_t *) &info.shape[0], |
| 107 | (Py_intptr_t *) &info.strides[0], info.ptr, 0, nullptr); |
| 108 | if (tmp == nullptr) |
| 109 | throw std::runtime_error("NumPy: unable to create array!"); |
| 110 | m_ptr = api.PyArray_NewCopy(tmp, -1 /* any order */); |
| 111 | Py_DECREF(tmp); |
| 112 | if (m_ptr == nullptr) |
| 113 | throw std::runtime_error("NumPy: unable to copy array!"); |
| 114 | } |
| 115 | |
| 116 | protected: |
| 117 | static API &lookup_api() { |
| 118 | static API api = API::lookup(); |
| 119 | return api; |
| 120 | } |
| 121 | }; |
| 122 | |
| 123 | template <typename T> class array_dtype : public array { |
| 124 | public: |
| 125 | PYBIND_OBJECT_CVT(array_dtype, array, is_non_null, m_ptr = ensure(m_ptr)); |
| 126 | array_dtype() : array() { } |
| 127 | static bool is_non_null(PyObject *ptr) { return ptr != nullptr; } |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 128 | PyObject *ensure(PyObject *ptr) { |
Wenzel Jakob | 281aa0e | 2015-07-30 15:29:00 +0200 | [diff] [blame^] | 129 | if (ptr == nullptr) |
| 130 | return nullptr; |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 131 | API &api = lookup_api(); |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 132 | PyObject *descr = api.PyArray_DescrFromType(npy_format_descriptor<T>::value); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 133 | return api.PyArray_FromAny(ptr, descr, 0, 0, |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 134 | API::NPY_C_CONTIGUOUS | API::NPY_ENSURE_ARRAY | |
| 135 | API::NPY_NPY_ARRAY_FORCECAST, nullptr); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 136 | } |
| 137 | }; |
| 138 | |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 139 | #define DECL_FMT(t, n) template<> struct npy_format_descriptor<t> { enum { value = array::API::n }; } |
| 140 | DECL_FMT(int8_t, NPY_BYTE); DECL_FMT(uint8_t, NPY_UBYTE); DECL_FMT(int16_t, NPY_SHORT); |
| 141 | DECL_FMT(uint16_t, NPY_USHORT); DECL_FMT(int32_t, NPY_INT); DECL_FMT(uint32_t, NPY_UINT); |
| 142 | DECL_FMT(int64_t, NPY_LONGLONG); DECL_FMT(uint64_t, NPY_ULONGLONG); DECL_FMT(float, NPY_FLOAT); |
| 143 | DECL_FMT(double, NPY_DOUBLE); DECL_FMT(bool, NPY_BOOL); DECL_FMT(std::complex<float>, NPY_CFLOAT); |
| 144 | DECL_FMT(std::complex<double>, NPY_CDOUBLE); |
| 145 | #undef DECL_FMT |
| 146 | |
| 147 | |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 148 | NAMESPACE_BEGIN(detail) |
| 149 | PYBIND_TYPE_CASTER_PYTYPE(array) |
| 150 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<int8_t>) PYBIND_TYPE_CASTER_PYTYPE(array_dtype<uint8_t>) |
| 151 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<int16_t>) PYBIND_TYPE_CASTER_PYTYPE(array_dtype<uint16_t>) |
| 152 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<int32_t>) PYBIND_TYPE_CASTER_PYTYPE(array_dtype<uint32_t>) |
| 153 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<int64_t>) PYBIND_TYPE_CASTER_PYTYPE(array_dtype<uint64_t>) |
| 154 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<float>) PYBIND_TYPE_CASTER_PYTYPE(array_dtype<double>) |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 155 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<std::complex<float>>) |
| 156 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<std::complex<double>>) |
| 157 | PYBIND_TYPE_CASTER_PYTYPE(array_dtype<bool>) |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 158 | |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 159 | template <typename Func, typename Return, typename... Args> |
| 160 | struct vectorize_helper { |
| 161 | typename std::remove_reference<Func>::type f; |
Wenzel Jakob | 43398a8 | 2015-07-28 16:12:20 +0200 | [diff] [blame] | 162 | |
Wenzel Jakob | 281aa0e | 2015-07-30 15:29:00 +0200 | [diff] [blame^] | 163 | template <typename T> |
| 164 | vectorize_helper(T&&f) : f(std::forward<T>(f)) { } |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 165 | |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 166 | object operator()(array_dtype<Args>... args) { |
| 167 | return run(args..., typename make_index_sequence<sizeof...(Args)>::type()); |
| 168 | } |
| 169 | |
| 170 | template <size_t ... Index> object run(array_dtype<Args>&... args, index_sequence<Index...>) { |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 171 | /* Request buffers from all parameters */ |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 172 | const size_t N = sizeof...(Args); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 173 | std::array<buffer_info, N> buffers {{ args.request()... }}; |
| 174 | |
| 175 | /* Determine dimensions parameters of output array */ |
| 176 | int ndim = 0; size_t count = 0; |
| 177 | std::vector<size_t> shape; |
| 178 | for (size_t i=0; i<N; ++i) { |
| 179 | if (buffers[i].count > count) { |
| 180 | ndim = buffers[i].ndim; |
| 181 | shape = buffers[i].shape; |
| 182 | count = buffers[i].count; |
| 183 | } |
| 184 | } |
| 185 | std::vector<size_t> strides(ndim); |
| 186 | if (ndim > 0) { |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 187 | strides[ndim-1] = sizeof(Return); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 188 | for (int i=ndim-1; i>0; --i) |
| 189 | strides[i-1] = strides[i] * shape[i]; |
| 190 | } |
| 191 | |
| 192 | /* Check if the parameters are actually compatible */ |
| 193 | for (size_t i=0; i<N; ++i) { |
| 194 | if (buffers[i].count != 1 && (buffers[i].ndim != ndim || buffers[i].shape != shape)) |
| 195 | throw std::runtime_error("pybind::vectorize: incompatible size/dimension of inputs!"); |
| 196 | } |
| 197 | |
| 198 | /* Call the function */ |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 199 | std::vector<Return> result(count); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 200 | for (size_t i=0; i<count; ++i) |
| 201 | result[i] = f((buffers[Index].count == 1 |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 202 | ? *((Args *) buffers[Index].ptr) |
| 203 | : ((Args *) buffers[Index].ptr)[i])...); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 204 | |
| 205 | if (count == 1) |
| 206 | return cast(result[0]); |
| 207 | |
| 208 | /* Return the result */ |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 209 | return array(buffer_info(result.data(), sizeof(Return), |
| 210 | format_descriptor<Return>::value(), |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 211 | ndim, shape, strides)); |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 212 | } |
| 213 | }; |
| 214 | |
| 215 | NAMESPACE_END(detail) |
| 216 | |
| 217 | template <typename Func, typename Return, typename... Args> |
| 218 | detail::vectorize_helper<Func, Return, Args...> vectorize(const Func &f, Return (*) (Args ...)) { |
| 219 | return detail::vectorize_helper<Func, Return, Args...>(f); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 220 | } |
| 221 | |
Wenzel Jakob | a576e6a | 2015-07-29 17:51:54 +0200 | [diff] [blame] | 222 | template <typename Return, typename... Args> |
| 223 | detail::vectorize_helper<Return (*) (Args ...), Return, Args...> vectorize(Return (*f) (Args ...)) { |
| 224 | return vectorize<Return (*) (Args ...), Return, Args...>(f, f); |
Wenzel Jakob | d4258ba | 2015-07-26 16:33:49 +0200 | [diff] [blame] | 225 | } |
| 226 | |
| 227 | template <typename func> auto vectorize(func &&f) -> decltype( |
| 228 | vectorize(std::forward<func>(f), (typename detail::remove_class<decltype(&std::remove_reference<func>::type::operator())>::type *) nullptr)) { |
| 229 | return vectorize(std::forward<func>(f), (typename detail::remove_class<decltype( |
| 230 | &std::remove_reference<func>::type::operator())>::type *) nullptr); |
| 231 | } |
| 232 | |
| 233 | NAMESPACE_END(pybind) |
| 234 | |
| 235 | #if defined(_MSC_VER) |
| 236 | #pragma warning(pop) |
| 237 | #endif |