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Raymond Hettingerc46cb2a2004-04-19 19:06:21 +00001"""Heap queue algorithm (a.k.a. priority queue).
2
3Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for
4all k, counting elements from 0. For the sake of comparison,
5non-existing elements are considered to be infinite. The interesting
6property of a heap is that a[0] is always its smallest element.
7
8Usage:
9
10heap = [] # creates an empty heap
11heappush(heap, item) # pushes a new item on the heap
12item = heappop(heap) # pops the smallest item from the heap
13item = heap[0] # smallest item on the heap without popping it
14heapify(x) # transforms list into a heap, in-place, in linear time
15item = heapreplace(heap, item) # pops and returns smallest item, and adds
16 # new item; the heap size is unchanged
17
18Our API differs from textbook heap algorithms as follows:
19
20- We use 0-based indexing. This makes the relationship between the
21 index for a node and the indexes for its children slightly less
22 obvious, but is more suitable since Python uses 0-based indexing.
23
24- Our heappop() method returns the smallest item, not the largest.
25
26These two make it possible to view the heap as a regular Python list
27without surprises: heap[0] is the smallest item, and heap.sort()
28maintains the heap invariant!
29"""
30
Raymond Hettinger33ecffb2004-06-10 05:03:17 +000031# Original code by Kevin O'Connor, augmented by Tim Peters and Raymond Hettinger
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +000032
33__about__ = """Heap queues
34
Mark Dickinsonb4a17a82010-07-04 19:23:49 +000035[explanation by François Pinard]
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +000036
37Heaps are arrays for which a[k] <= a[2*k+1] and a[k] <= a[2*k+2] for
38all k, counting elements from 0. For the sake of comparison,
39non-existing elements are considered to be infinite. The interesting
40property of a heap is that a[0] is always its smallest element.
41
42The strange invariant above is meant to be an efficient memory
43representation for a tournament. The numbers below are `k', not a[k]:
44
45 0
46
47 1 2
48
49 3 4 5 6
50
51 7 8 9 10 11 12 13 14
52
53 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30
54
55
56In the tree above, each cell `k' is topping `2*k+1' and `2*k+2'. In
57an usual binary tournament we see in sports, each cell is the winner
58over the two cells it tops, and we can trace the winner down the tree
59to see all opponents s/he had. However, in many computer applications
60of such tournaments, we do not need to trace the history of a winner.
61To be more memory efficient, when a winner is promoted, we try to
62replace it by something else at a lower level, and the rule becomes
63that a cell and the two cells it tops contain three different items,
64but the top cell "wins" over the two topped cells.
65
66If this heap invariant is protected at all time, index 0 is clearly
67the overall winner. The simplest algorithmic way to remove it and
68find the "next" winner is to move some loser (let's say cell 30 in the
69diagram above) into the 0 position, and then percolate this new 0 down
70the tree, exchanging values, until the invariant is re-established.
71This is clearly logarithmic on the total number of items in the tree.
72By iterating over all items, you get an O(n ln n) sort.
73
74A nice feature of this sort is that you can efficiently insert new
75items while the sort is going on, provided that the inserted items are
76not "better" than the last 0'th element you extracted. This is
77especially useful in simulation contexts, where the tree holds all
78incoming events, and the "win" condition means the smallest scheduled
79time. When an event schedule other events for execution, they are
80scheduled into the future, so they can easily go into the heap. So, a
81heap is a good structure for implementing schedulers (this is what I
82used for my MIDI sequencer :-).
83
84Various structures for implementing schedulers have been extensively
85studied, and heaps are good for this, as they are reasonably speedy,
86the speed is almost constant, and the worst case is not much different
87than the average case. However, there are other representations which
88are more efficient overall, yet the worst cases might be terrible.
89
90Heaps are also very useful in big disk sorts. You most probably all
91know that a big sort implies producing "runs" (which are pre-sorted
92sequences, which size is usually related to the amount of CPU memory),
93followed by a merging passes for these runs, which merging is often
94very cleverly organised[1]. It is very important that the initial
95sort produces the longest runs possible. Tournaments are a good way
96to that. If, using all the memory available to hold a tournament, you
97replace and percolate items that happen to fit the current run, you'll
98produce runs which are twice the size of the memory for random input,
99and much better for input fuzzily ordered.
100
101Moreover, if you output the 0'th item on disk and get an input which
102may not fit in the current tournament (because the value "wins" over
103the last output value), it cannot fit in the heap, so the size of the
104heap decreases. The freed memory could be cleverly reused immediately
105for progressively building a second heap, which grows at exactly the
106same rate the first heap is melting. When the first heap completely
107vanishes, you switch heaps and start a new run. Clever and quite
108effective!
109
110In a word, heaps are useful memory structures to know. I use them in
111a few applications, and I think it is good to keep a `heap' module
112around. :-)
113
114--------------------
115[1] The disk balancing algorithms which are current, nowadays, are
116more annoying than clever, and this is a consequence of the seeking
117capabilities of the disks. On devices which cannot seek, like big
118tape drives, the story was quite different, and one had to be very
119clever to ensure (far in advance) that each tape movement will be the
120most effective possible (that is, will best participate at
121"progressing" the merge). Some tapes were even able to read
122backwards, and this was also used to avoid the rewinding time.
123Believe me, real good tape sorts were quite spectacular to watch!
124From all times, sorting has always been a Great Art! :-)
125"""
126
Thomas Wouterscf297e42007-02-23 15:07:44 +0000127__all__ = ['heappush', 'heappop', 'heapify', 'heapreplace', 'merge',
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000128 'nlargest', 'nsmallest', 'heappushpop']
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000129
Raymond Hettingerf6b26672013-03-05 01:36:30 -0500130from itertools import islice, count, tee, chain
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000131
132def heappush(heap, item):
133 """Push item onto heap, maintaining the heap invariant."""
134 heap.append(item)
135 _siftdown(heap, 0, len(heap)-1)
136
137def heappop(heap):
138 """Pop the smallest item off the heap, maintaining the heap invariant."""
139 lastelt = heap.pop() # raises appropriate IndexError if heap is empty
140 if heap:
141 returnitem = heap[0]
142 heap[0] = lastelt
143 _siftup(heap, 0)
144 else:
145 returnitem = lastelt
146 return returnitem
147
148def heapreplace(heap, item):
149 """Pop and return the current smallest value, and add the new item.
150
151 This is more efficient than heappop() followed by heappush(), and can be
152 more appropriate when using a fixed-size heap. Note that the value
153 returned may be larger than item! That constrains reasonable uses of
Raymond Hettinger8158e842004-09-06 07:04:09 +0000154 this routine unless written as part of a conditional replacement:
Raymond Hettinger28224f82004-06-20 09:07:53 +0000155
Raymond Hettinger8158e842004-09-06 07:04:09 +0000156 if item > heap[0]:
157 item = heapreplace(heap, item)
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000158 """
159 returnitem = heap[0] # raises appropriate IndexError if heap is empty
160 heap[0] = item
161 _siftup(heap, 0)
162 return returnitem
163
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000164def heappushpop(heap, item):
165 """Fast version of a heappush followed by a heappop."""
Georg Brandlf78e02b2008-06-10 17:40:04 +0000166 if heap and heap[0] < item:
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000167 item, heap[0] = heap[0], item
168 _siftup(heap, 0)
169 return item
170
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000171def heapify(x):
Éric Araujo395ba352011-04-15 23:34:31 +0200172 """Transform list into a heap, in-place, in O(len(x)) time."""
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000173 n = len(x)
174 # Transform bottom-up. The largest index there's any point to looking at
175 # is the largest with a child index in-range, so must have 2*i + 1 < n,
176 # or i < (n-1)/2. If n is even = 2*j, this is (2*j-1)/2 = j-1/2 so
177 # j-1 is the largest, which is n//2 - 1. If n is odd = 2*j+1, this is
178 # (2*j+1-1)/2 = j so j-1 is the largest, and that's again n//2-1.
Guido van Rossum805365e2007-05-07 22:24:25 +0000179 for i in reversed(range(n//2)):
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000180 _siftup(x, i)
181
Raymond Hettingerf6b26672013-03-05 01:36:30 -0500182def _heappushpop_max(heap, item):
183 """Maxheap version of a heappush followed by a heappop."""
184 if heap and item < heap[0]:
185 item, heap[0] = heap[0], item
186 _siftup_max(heap, 0)
187 return item
188
189def _heapify_max(x):
190 """Transform list into a maxheap, in-place, in O(len(x)) time."""
191 n = len(x)
192 for i in reversed(range(n//2)):
193 _siftup_max(x, i)
194
Raymond Hettingere1defa42004-11-29 05:54:48 +0000195def nlargest(n, iterable):
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000196 """Find the n largest elements in a dataset.
197
198 Equivalent to: sorted(iterable, reverse=True)[:n]
199 """
Raymond Hettingere5844572011-10-30 14:32:54 -0700200 if n < 0:
201 return []
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000202 it = iter(iterable)
203 result = list(islice(it, n))
204 if not result:
205 return result
206 heapify(result)
Christian Heimesdd15f6c2008-03-16 00:07:10 +0000207 _heappushpop = heappushpop
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000208 for elem in it:
Benjamin Peterson5c6d7872009-02-06 02:40:07 +0000209 _heappushpop(result, elem)
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000210 result.sort(reverse=True)
211 return result
212
Raymond Hettingere1defa42004-11-29 05:54:48 +0000213def nsmallest(n, iterable):
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000214 """Find the n smallest elements in a dataset.
215
216 Equivalent to: sorted(iterable)[:n]
217 """
Raymond Hettingere5844572011-10-30 14:32:54 -0700218 if n < 0:
219 return []
Raymond Hettingerf6b26672013-03-05 01:36:30 -0500220 it = iter(iterable)
221 result = list(islice(it, n))
222 if not result:
Raymond Hettingerb25aa362004-06-12 08:33:36 +0000223 return result
Raymond Hettingerf6b26672013-03-05 01:36:30 -0500224 _heapify_max(result)
225 _heappushpop = _heappushpop_max
226 for elem in it:
227 _heappushpop(result, elem)
228 result.sort()
229 return result
Raymond Hettinger33ecffb2004-06-10 05:03:17 +0000230
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000231# 'heap' is a heap at all indices >= startpos, except possibly for pos. pos
232# is the index of a leaf with a possibly out-of-order value. Restore the
233# heap invariant.
234def _siftdown(heap, startpos, pos):
235 newitem = heap[pos]
236 # Follow the path to the root, moving parents down until finding a place
237 # newitem fits.
238 while pos > startpos:
239 parentpos = (pos - 1) >> 1
240 parent = heap[parentpos]
Georg Brandlf78e02b2008-06-10 17:40:04 +0000241 if newitem < parent:
242 heap[pos] = parent
243 pos = parentpos
244 continue
245 break
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000246 heap[pos] = newitem
247
248# The child indices of heap index pos are already heaps, and we want to make
249# a heap at index pos too. We do this by bubbling the smaller child of
250# pos up (and so on with that child's children, etc) until hitting a leaf,
251# then using _siftdown to move the oddball originally at index pos into place.
252#
253# We *could* break out of the loop as soon as we find a pos where newitem <=
254# both its children, but turns out that's not a good idea, and despite that
255# many books write the algorithm that way. During a heap pop, the last array
256# element is sifted in, and that tends to be large, so that comparing it
257# against values starting from the root usually doesn't pay (= usually doesn't
258# get us out of the loop early). See Knuth, Volume 3, where this is
259# explained and quantified in an exercise.
260#
261# Cutting the # of comparisons is important, since these routines have no
262# way to extract "the priority" from an array element, so that intelligence
Mark Dickinsona56c4672009-01-27 18:17:45 +0000263# is likely to be hiding in custom comparison methods, or in array elements
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000264# storing (priority, record) tuples. Comparisons are thus potentially
265# expensive.
266#
267# On random arrays of length 1000, making this change cut the number of
268# comparisons made by heapify() a little, and those made by exhaustive
269# heappop() a lot, in accord with theory. Here are typical results from 3
270# runs (3 just to demonstrate how small the variance is):
271#
272# Compares needed by heapify Compares needed by 1000 heappops
273# -------------------------- --------------------------------
274# 1837 cut to 1663 14996 cut to 8680
275# 1855 cut to 1659 14966 cut to 8678
276# 1847 cut to 1660 15024 cut to 8703
277#
278# Building the heap by using heappush() 1000 times instead required
279# 2198, 2148, and 2219 compares: heapify() is more efficient, when
280# you can use it.
281#
282# The total compares needed by list.sort() on the same lists were 8627,
283# 8627, and 8632 (this should be compared to the sum of heapify() and
284# heappop() compares): list.sort() is (unsurprisingly!) more efficient
285# for sorting.
286
287def _siftup(heap, pos):
288 endpos = len(heap)
289 startpos = pos
290 newitem = heap[pos]
291 # Bubble up the smaller child until hitting a leaf.
292 childpos = 2*pos + 1 # leftmost child position
293 while childpos < endpos:
294 # Set childpos to index of smaller child.
295 rightpos = childpos + 1
Georg Brandlf78e02b2008-06-10 17:40:04 +0000296 if rightpos < endpos and not heap[childpos] < heap[rightpos]:
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000297 childpos = rightpos
298 # Move the smaller child up.
299 heap[pos] = heap[childpos]
300 pos = childpos
301 childpos = 2*pos + 1
302 # The leaf at pos is empty now. Put newitem there, and bubble it up
303 # to its final resting place (by sifting its parents down).
304 heap[pos] = newitem
305 _siftdown(heap, startpos, pos)
306
Raymond Hettingerf6b26672013-03-05 01:36:30 -0500307def _siftdown_max(heap, startpos, pos):
308 'Maxheap variant of _siftdown'
309 newitem = heap[pos]
310 # Follow the path to the root, moving parents down until finding a place
311 # newitem fits.
312 while pos > startpos:
313 parentpos = (pos - 1) >> 1
314 parent = heap[parentpos]
315 if parent < newitem:
316 heap[pos] = parent
317 pos = parentpos
318 continue
319 break
320 heap[pos] = newitem
321
322def _siftup_max(heap, pos):
Raymond Hettinger2e8d9a72013-03-05 02:11:10 -0500323 'Maxheap variant of _siftup'
Raymond Hettingerf6b26672013-03-05 01:36:30 -0500324 endpos = len(heap)
325 startpos = pos
326 newitem = heap[pos]
327 # Bubble up the larger child until hitting a leaf.
328 childpos = 2*pos + 1 # leftmost child position
329 while childpos < endpos:
330 # Set childpos to index of larger child.
331 rightpos = childpos + 1
332 if rightpos < endpos and not heap[rightpos] < heap[childpos]:
333 childpos = rightpos
334 # Move the larger child up.
335 heap[pos] = heap[childpos]
336 pos = childpos
337 childpos = 2*pos + 1
338 # The leaf at pos is empty now. Put newitem there, and bubble it up
339 # to its final resting place (by sifting its parents down).
340 heap[pos] = newitem
341 _siftdown_max(heap, startpos, pos)
342
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000343# If available, use C implementation
344try:
Raymond Hettinger0dd737b2009-03-29 19:30:50 +0000345 from _heapq import *
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000346except ImportError:
347 pass
348
Thomas Wouterscf297e42007-02-23 15:07:44 +0000349def merge(*iterables):
350 '''Merge multiple sorted inputs into a single sorted output.
351
Guido van Rossumd8faa362007-04-27 19:54:29 +0000352 Similar to sorted(itertools.chain(*iterables)) but returns a generator,
Thomas Wouterscf297e42007-02-23 15:07:44 +0000353 does not pull the data into memory all at once, and assumes that each of
354 the input streams is already sorted (smallest to largest).
355
356 >>> list(merge([1,3,5,7], [0,2,4,8], [5,10,15,20], [], [25]))
357 [0, 1, 2, 3, 4, 5, 5, 7, 8, 10, 15, 20, 25]
358
359 '''
360 _heappop, _heapreplace, _StopIteration = heappop, heapreplace, StopIteration
Raymond Hettinger46f5ca32013-09-14 20:51:57 -0700361 _len = len
Thomas Wouterscf297e42007-02-23 15:07:44 +0000362
363 h = []
364 h_append = h.append
365 for itnum, it in enumerate(map(iter, iterables)):
366 try:
Georg Brandla18af4e2007-04-21 15:47:16 +0000367 next = it.__next__
Thomas Wouterscf297e42007-02-23 15:07:44 +0000368 h_append([next(), itnum, next])
369 except _StopIteration:
370 pass
371 heapify(h)
372
Raymond Hettinger46f5ca32013-09-14 20:51:57 -0700373 while _len(h) > 1:
Thomas Wouterscf297e42007-02-23 15:07:44 +0000374 try:
Raymond Hettinger46f5ca32013-09-14 20:51:57 -0700375 while True:
376 v, itnum, next = s = h[0]
Thomas Wouterscf297e42007-02-23 15:07:44 +0000377 yield v
378 s[0] = next() # raises StopIteration when exhausted
379 _heapreplace(h, s) # restore heap condition
380 except _StopIteration:
381 _heappop(h) # remove empty iterator
Raymond Hettinger46f5ca32013-09-14 20:51:57 -0700382 if h:
383 # fast case when only a single iterator remains
384 v, itnum, next = h[0]
385 yield v
386 yield from next.__self__
Thomas Wouterscf297e42007-02-23 15:07:44 +0000387
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000388# Extend the implementations of nsmallest and nlargest to use a key= argument
389_nsmallest = nsmallest
390def nsmallest(n, iterable, key=None):
391 """Find the n smallest elements in a dataset.
392
393 Equivalent to: sorted(iterable, key=key)[:n]
394 """
Benjamin Peterson18e95122009-01-18 22:46:33 +0000395 # Short-cut for n==1 is to use min() when len(iterable)>0
396 if n == 1:
397 it = iter(iterable)
398 head = list(islice(it, 1))
399 if not head:
400 return []
401 if key is None:
402 return [min(chain(head, it))]
403 return [min(chain(head, it), key=key)]
404
Éric Araujo395ba352011-04-15 23:34:31 +0200405 # When n>=size, it's faster to use sorted()
Benjamin Peterson18e95122009-01-18 22:46:33 +0000406 try:
407 size = len(iterable)
408 except (TypeError, AttributeError):
409 pass
410 else:
411 if n >= size:
412 return sorted(iterable, key=key)[:n]
413
414 # When key is none, use simpler decoration
Georg Brandl3a9b0622009-01-03 22:07:57 +0000415 if key is None:
416 it = zip(iterable, count()) # decorate
417 result = _nsmallest(n, it)
Raymond Hettingerba86fa92009-02-21 23:20:57 +0000418 return [r[0] for r in result] # undecorate
Benjamin Peterson18e95122009-01-18 22:46:33 +0000419
420 # General case, slowest method
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000421 in1, in2 = tee(iterable)
Georg Brandl3a9b0622009-01-03 22:07:57 +0000422 it = zip(map(key, in1), count(), in2) # decorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000423 result = _nsmallest(n, it)
Raymond Hettingerba86fa92009-02-21 23:20:57 +0000424 return [r[2] for r in result] # undecorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000425
426_nlargest = nlargest
427def nlargest(n, iterable, key=None):
428 """Find the n largest elements in a dataset.
429
430 Equivalent to: sorted(iterable, key=key, reverse=True)[:n]
431 """
Benjamin Peterson18e95122009-01-18 22:46:33 +0000432
433 # Short-cut for n==1 is to use max() when len(iterable)>0
434 if n == 1:
435 it = iter(iterable)
436 head = list(islice(it, 1))
437 if not head:
438 return []
439 if key is None:
440 return [max(chain(head, it))]
441 return [max(chain(head, it), key=key)]
442
Éric Araujo395ba352011-04-15 23:34:31 +0200443 # When n>=size, it's faster to use sorted()
Benjamin Peterson18e95122009-01-18 22:46:33 +0000444 try:
445 size = len(iterable)
446 except (TypeError, AttributeError):
447 pass
448 else:
449 if n >= size:
450 return sorted(iterable, key=key, reverse=True)[:n]
451
452 # When key is none, use simpler decoration
Georg Brandl3a9b0622009-01-03 22:07:57 +0000453 if key is None:
Raymond Hettingerbd171bc2009-02-21 22:10:18 +0000454 it = zip(iterable, count(0,-1)) # decorate
Georg Brandl3a9b0622009-01-03 22:07:57 +0000455 result = _nlargest(n, it)
Raymond Hettingerba86fa92009-02-21 23:20:57 +0000456 return [r[0] for r in result] # undecorate
Benjamin Peterson18e95122009-01-18 22:46:33 +0000457
458 # General case, slowest method
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000459 in1, in2 = tee(iterable)
Raymond Hettingerbd171bc2009-02-21 22:10:18 +0000460 it = zip(map(key, in1), count(0,-1), in2) # decorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000461 result = _nlargest(n, it)
Raymond Hettingerba86fa92009-02-21 23:20:57 +0000462 return [r[2] for r in result] # undecorate
Raymond Hettinger4901a1f2004-12-02 08:59:14 +0000463
Raymond Hettingerc46cb2a2004-04-19 19:06:21 +0000464if __name__ == "__main__":
465 # Simple sanity test
466 heap = []
467 data = [1, 3, 5, 7, 9, 2, 4, 6, 8, 0]
468 for item in data:
469 heappush(heap, item)
470 sort = []
471 while heap:
472 sort.append(heappop(heap))
Guido van Rossumbe19ed72007-02-09 05:37:30 +0000473 print(sort)
Thomas Wouterscf297e42007-02-23 15:07:44 +0000474
475 import doctest
476 doctest.testmod()